------- SECIS element -- id:1 -- grade:A ---- Chromosome = JXSJ01000029.1:subseq_1601922,100791_ Strand = + Positions = 51236 - 51308 Found by: Infernal (score=31.46) Covels (score=23.1) Stem2 length = 11 Apical loop length = 14 Insertion in stem2 = 0, 1 Free Energy = -19.84 ..(((((((.......(((((((((((((((...............))))))))).))))))........))))))).. model uucggucaugcgUuaAUGAcGgccuggcccuAAAcCcuuuuuggggcgggccagg-cCuGAUGuuuuuucaugaccggc (((((((((---....{[[((((((((((((.....-.........))))))))).)))]]}..--....))))))))) target UCUGGUGUU---UCUGUGAAGUUCGGUUUUUAAAAG-GCGAAGCCAGAAAACCGACACUGAUGA--UUCCGACACCGGG **** ^^^ **** ------- SECIS element -- id:2 -- grade:B ---- Chromosome = JXSJ01000029.1:subseq_1601922,100791_ Strand = - Positions = 20331 - 20251 Found by: Infernal (score=12.27) Covels (score=5.21) Stem2 length = 9 Apical loop length = 12 Insertion in stem2 = 0, 0 Free Energy = -8.3 ..(((((((.................(((((((((((((((................)))))))))))))))........))))))).. model uucggucaugcg----------UuaAUGAcGgccuggcccuAAAcC-cuuuuuggggcgggccaggcCuGAUGuuuuuucaugaccggc ..(((({((.................{[[(((((({((((------............))))}))))))]]}..--....))})))).. target UCUUCACUGCCUGCACUGAUCAUUGAUGAACUUUAAUGGC------AGACCACAGGGAGUCAAUGAAGUGAUGU--GAGUUACUGAAAG **** ^^ ****