------- SECIS element -- id:1 -- grade:A ----
 Chromosome = JXSJ01000014.1:subseq_2346940,101317_ Strand = + Positions = 53113 - 53181
 Found by:  Infernal (score=41.12) Covels (score=31.57)
 Stem2 length = 9   Apical loop length = 14   Insertion in stem2 = 0, 0
 Free Energy = -18.04

         ..(((((((.......(((((((((((((((...............)))))))))))))))........)))))))..
 model   uucggucaugcgUuaAUGAcGgccuggcccuAAAcCcuuuuuggggcgggccaggcCuGAUGuuuuuucaugaccggc
         ..((((((((--....{[[{(((((((((..........-----....)))))))))}]]}..--...))))))))..
 target  GGCUGCUUUU--UAUAUGAUGAUUACAGUGCAAACCUCU-----GGUAACUGUAAUCUGAUGA--CUUAAAAGUAGGC
                         ****           ^^^                       ****                 

------- SECIS element -- id:2 -- grade:A ----
 Chromosome = JXSJ01000014.1:subseq_2346940,101317_ Strand = + Positions = 52865 - 52931
 Found by:  Infernal (score=32.37) Covels (score=20.45)
 Stem2 length = 8   Apical loop length = 14   Insertion in stem2 = 0, 0
 Free Energy = -12.84

         ..(((((((.......(((((((((((((((...............)))))))))))))))........)))))))..
 model   uucggucaugcgUuaAUGAcGgccuggcccuAAAcCcuuuuuggggcgggccaggcCuGAUGuuuuuucaugaccggc
         ..({(((((---....{[[{(({((((((..........-----....))))))}))}]]}..--..-.)))))})..
 target  CAGCGUUUC---UUAGUGACGGCUACAGAUUAAACCGUU-----GGCUUCUGUAACCAGAUGA--UG-UGAAACACGC
                         ****           ^^^                       ****                 

------- SECIS element -- id:3 -- grade:B ----
 Chromosome = JXSJ01000014.1:subseq_2346940,101317_ Strand = + Positions = 90717 - 90805
 Found by:  Infernal (score=10.44)
 Stem2 length = 9   Apical loop length = 30   Insertion in stem2 = 0, 0
 Free Energy = -7.01

         ..(((((((.......(((((((((((((................................)))))))))))))..........)))))))..
 model   uucggucaugcgUuaAUGAcGgccuggcccgAAAcCcuuuuuggggug-------------ggccaggcCuGAUGuu-u-uuucaugaccggc
         ..({{((((---((..{[[{((({((((((..............................))))))})))}]]}......-.))))))}})..
 target  GCUGCUGCU---UUAAUGAUGUGUCAAUGGACAGGCUUAUCGACCUGCAGUCCAAGCUCAUCAUUGCCAUUGACGUGGCC-AAGGGCAUGGAG
                         ****                                                  ****