_________________________________.______________________._________________________________________________________________________________
_|*|_|*|_|*|_|*|_|*|_|*|_|*|_|*| |       knownSP        |  secis_index:1     SeB_exonerate category:ALI_U |*|_|*|_|*|_|*|_|*|_|*|_|*|_|*|_
_________________________________|______________________|_________________________________________________________________________________

 Blastx evalue: 2e-19
 Query name: gi|1007706936|ref|XP_015808232.1| PREDICTED: selenoprotein T2-like isoform X2 [Nothobranchius furzeri]
 Query range: 1-173  (total 203)

 Target: /data/www-rg/seblastian_results/143318573/tempfiles/temptarget.fasta
 Chromosome: JXSJ01000199.1:subseq_170221,101612_ Strand: +
 Positions:
 -Exon 1  50000        50110
 -Exon 2  50135        50217
 -Exon 3  50471        50581
 -Exon 4  50876        51002
 -Exon 5  51076        51165

 Redox box: YES

Query   MAEFGPGGLSAVLLLFMALTLRDIYIGRSEQRPGLSP <---Intron---> ETE-TDSDPGKTVKAALYSGPVLQFRYC <---Intron---> ISU
        |||/   || | |||| |||/||/|/|||    |  | <    24bp    > /|   |//|||  |//||/||||/|/|| <   253bp    > |||
Target  MAEYSQAGLLAALLLFTALTVRDVYLGRSSLHRGQQP                DTVLPDTEPGKPTKSSLYTGPVLKFQYC                ISU
        aggtacggccggccctagcagcggtcgatacccgccc                gagccgagcgacaattctagcgcatctt                att
        tcaagacgttccttttcctctgatatggcgtaggaac                acttcacacgaccacctacgcttataag                tcg
        gggccggccggtgcccgtggctcccccagcgtcaaag                tcaagcaacaaccgccgccgtgcgcgc                tcca
                                                                                                           *

Query   GYSKVFQEYSNAISQVYPDIRIQGENHPPTPINR <---Intron---> CFAQLISYLKLLSILLIISGQNPFSLLSLDTPSAWTWSQNNK <---Int
        |||||||||| ||||/||||||/|||/|||| || <   294bp    > |   |/|||||||||||/|||||| || |||| ||||||/|| <    73
Target  GYSKVFQEYSRAISQLYPDIRIEGENYPPTPFNR                CVGNLVSYLKLLSILLIVSGQNPFILLGLDTPRAWTWSQDNK        
        gtaagtcgttcgaacctcgacagggatccactaa                tggacgttcacctaccagagcactaccgcgaccgtatacgaa        
        gagattaaacgctgatacatgtagaaacccctag                gtgattcatattctttttggaacttttgtaccgcgcggaaaa        
        gccagcggcaacccggcgccctgaacctacccc                gttgcgcccgggcccccccctgcgccggccctggcgcgtgccg        
                                                                                                            

Query   ron---> IFSCLMAFFICNMMETHFLSTGAFEVTLNG
        bp    > |||||||||/||||||||||||||||||||
Target          IFSCLMAFFLCNMMETHFLSTGAFEVTLNG
                atttcagttctaaagactctaggtggacag
                ttcgttctttgattacattccgctatctag
                ccctggccccccgggtccgtgaccgctgct
                                              
 Sequence until next stop: 
GAGTTCTGA
 E  F  * 

 Distance CDS-SECIS: 714 ; UGA-SECIS: 1032

------- SECIS element -- id:1 -- grade:A ----
 Chromosome = JXSJ01000199.1:subseq_170221,101612_ Strand = + Positions = 51880 - 51956
 Found by:  Infernal (score=29.08) Covels (score=31.41)
 Stem2 length = 9   Apical loop length = 14   Insertion in stem2 = 0, 0
 Free Energy = -12.5

         ..(((((((.......(((((((((((((((...............))))))))))))))).........)))))))..
 model   uucggucaugcgUuaAUGAcGgccuggcccuAAAcCcuuuuuggggcgggccaggcCuGAUGuuu-uuucaugaccggc
         ....((({(.......{[[[((({{((((((.....-.........))))))}})))]]]}.....-...)})))....
 target  UGGACGUUGGCGUUCAUGAAGGUUUGGUCUUAAAGC-AGACUCUGCAAGGCCCUGCCGGAUGUCCC-CUGCCACGAAUG
                         ****           ^^^                       ****