_________________________________.______________________._________________________________________________________________________________
_|*|_|*|_|*|_|*|_|*|_|*|_|*|_|*| |       knownSP        |  secis_index:1     SeB_exonerate category:ALI_U |*|_|*|_|*|_|*|_|*|_|*|_|*|_|*|_
_________________________________|______________________|_________________________________________________________________________________

 Blastx evalue: 9e-10
 Query name: gi|928014420|ref|XP_013877637.1| PREDICTED: migration and invasion enhancer 1-like [Austrofundulus limnaeus]
 Query range: 4-95  (total 95)

 Target: /data/www-rg/seblastian_results/419674056/tempfiles/temptarget.fasta
 Chromosome: JXSJ01000017.1:subseq_724172,100491_ Strand: +
 Positions:
 -Exon 1  50000        50117
 -Exon 2  50251        50327
 -Exon 3  50411        50491

 Redox box: no

Query   KIKVEYCGRUGYEPRYRELAQVVQAEFPEAEVSGFVGRTG <---Intron---> SFEVEINGQLVFSKLETNGFPYEDD <---Intron---> ILN
        // |   | ||| |||/|||/||/||||/|/||||||| | <   133bp    > |||/||||||/||||||/||||||| <    83bp    > |||
Target  RVFVPRSGAUGYAPRYQELARVVKAEFPDADVSGFVGRQG                SFEIEINGQLIFSKLETSGFPYEDD                ILN
        cgtgccaggtgtgcctcgcgcggaggtcggggtgtggacg                atgagaagccattacgaagtctggg                ata
        gtttcgggcggaccgaaatcgttacatcacatcgttgga                ggtatatagatttcatacggtcaaaa                tta
        ggttacccaaacacctggccgtcgtgtttgtgaccgaag                cccgtaccgggcccgcgttccatgtt                cgc
                 *                                                                                          

Query   AVQDACDGKPVQKITKSRAPCVIM
        ||| | ||||||||||||||||||
Target  AVQSADDGKPVQKITKSRAPCVIM
        ggcaggggacgcaaaaacgctgaa
        ctagcaagactaatcaggccgttt
        acgccctgactggccaccgccccg
                                
 Sequence until next stop: 
TAA
 * 

 Distance CDS-SECIS: 233 ; UGA-SECIS: 479

------- SECIS element -- id:1 -- grade:A ----
 Chromosome = JXSJ01000017.1:subseq_724172,100491_ Strand = + Positions = 50725 - 50800
 Found by:  Infernal (score=26.26) Covels (score=22.06)
 Stem2 length = 11   Apical loop length = 10   Insertion in stem2 = 0, 0
 Free Energy = -24.59

         ..(((((((........(((((((((((((((...............)))))))))))))))...........)))))))..
 model   uucggucaugcg-UuaAUGAcGgccuggcccuAAAcCcuuuuuggggcgggccaggcCuGAUGuu--u-uuucaugaccggc
         ..((((((((.......{[[{(((((((((((........-----..)))))))))))}]]}.......-..))))))))..
 target  GAGCUUCAGGCUGUUAAUGAUUACUGUAGCCUAAAAAGUU-----AAAGGUUGCGGUAUGAUGAAUCCA-UUCCUGGAGUGU
                          ****           ^^^                       ****