_________________________________.______________________._________________________________________________________________________________
_|*|_|*|_|*|_|*|_|*|_|*|_|*|_|*| |       knownSP        |  secis_index:1     SeB_exonerate category:ALI_U |*|_|*|_|*|_|*|_|*|_|*|_|*|_|*|_
_________________________________|______________________|_________________________________________________________________________________

 Blastx evalue: 7e-38
 Query name: gi|974049330|ref|XP_015246758.1| PREDICTED: redox-regulatory protein FAM213A-like isoform X1 [Cyprinodon variegatus]
 Query range: 20-281  (total 281)

 Target: /data/www-rg/seblastian_results/657785534/tempfiles/temptarget.fasta
 Chromosome: JXSJ01000036.1:subseq_1809825,53445_ Strand: -
 Positions:
 -Exon 1  52249        52369
 -Exon 2  51780        51953
 -Exon 3  51124        51215
 -Exon 4  50894        51034
 -Exon 5  50160        50324
 -Exon 6  49988        50080

 Redox box: YES

Query   SALLLASSSITAGPQFLTSQISKFHQSKARASPDPNKITSV <---Intron---> SGLESELLEMGMWSLGIGAVGAALAGIFLANTDMCLPKGENAT
        || / /  /  | ||||  | / ||||/|/|||||||  |  <   295bp    > |||| /|| |||||||/||||||||||||||||/|| |  |||
Target  SATMSSQLTTAARPQFLRIQTALFHQSEAKASPDPNKPASG                SGLEGDLLGMGMWSLGLGAVGAALAGIFLANTDLCLTKAANAT
        agaaaaccaaggacctcaacagctccaggagacgcaacgtg                tgcgggctgagatttgcggggggcggatcgaagctcaaggaga
        gcctggatccccgcattgtaccttaagacacgcacaaccc                gcgtagattgtgtgctgtgctgcctcgtttcacatgtcaccacc
        ctcgccgcccacgtgtaacgttgtcatacacttcacgcta                gcgggtcgggggggggtgcttctgacgccgccctgtgtatccag
                                                                                                            

Query   LEHLEDADLRSTTDD <---Intron---> SKVIKAKSLWEKNGAVVMAVRRPGUFLCRE <---Intron---> EASELSSLKPQLEELGVPLVAVV
        |||||| || ||||| <   564bp    >  |||||||||| |||||||||||||||||| <    89bp    > |||||||||||||||||||||||
Target  LEHLEDTDLCSTTDD                QKVIKAKSLWETNGAVVMAVRRPGUFLCRE                EASELSSLKPQLEELGVPLVAVV
        cgccggagcttaagg                cagaagaactgaaggggaggcccgttttag                ggtgcttcacccggcggccgggg
        taataacatgccca                aaattacagtgacagctttctggcggttgga                accatcctacataatgtcttctt
        ggctattcgcccat                tggccaagcagggtgtgcgcaagtaatgcag                gctggctggcggagcgctgccgg
                                                               *                                            

Query   KENVGTEIQDFRPHFAGDIYIDEK <---Intron---> KHFYGPLQRKMGGLGFVRLGVWQNFMRAWRSGYQGNMNGEGFILGGVFVIGAGDQ <---
        |||||||||||| |||||||/||/ <   569bp    > |||||||/||||||||/||||||||||||||||||||||||||||||||||||/| <   
Target  KENVGTEIQDFRLHFAGDIYVDEQ                KHFYGPLERKMGGLGFIRLGVWQNFMRAWRSGYQGNMNGEGFILGGVFVIGAGEQ     
        agaggagacgtacctgggatgggc                acttgccgaaaggcgtaccggtcatacgtatgtcgaaagggtacgggtgaggggc     
        aaatgcataatgtatcgatataaa                aatagctagatggtgttgtgtgaattgcggcgaagatagagtttggttttgcgaa     
        ggcccagcgccagcctgcccatag                accccagggggctgcctccagggccggtggctcgccgccgccccaagtccaaagg     
                                                                                                            

Query   Intron---> GILLEHKEKQFGDKVDTADVLKAAQKIVPMK
         79bp    > ||||||/||/||/||||||||/| /||||/|
Target             GILLEHREKEFGNKVDTADVLEAVKKIVPVK
                   gaccgccgagtgaaggagggtgggaaagcga
                   gtttaagaaatgaataccattactaattcta
                   gtcgattgggcctggttattagttgataata
                                                  
 Sequence until next stop: 
TAG
 * 

 Distance CDS-SECIS: 450 ; UGA-SECIS: 864

------- SECIS element -- id:1 -- grade:A ----
 Chromosome = JXSJ01000036.1:subseq_1809825,53445_ Strand = - Positions = 49537 - 49462
 Found by:  Infernal (score=35.58) Covels (score=31.75)
 Stem2 length = 10   Apical loop length = 16   Insertion in stem2 = 1, 0
 Free Energy = -18.21

         ..(((((((.......((((((((((.(((((...............)))))))))))))))........)))))))..
 model   uucggucaugcgUuaAUGAcGgccug-gcccuAAAcCcuuuuuggggcgggccaggcCuGAUGuuuuuucaugaccggc
         ..(((((((.......{[[{((((((.((((......-..........))))))))))}]]}..--....)))))))..
 target  UCUGUGUGUGUAAUAAUGAUAACUUGACUCUAAACUC-AACACUGAGAGGAGCAGGUUUGAUGC--UCAAACACACAAA
                         ****           ^^^                        ****