_________________________________.______________________._________________________________________________________________________________
_|*|_|*|_|*|_|*|_|*|_|*|_|*|_|*| |       knownSP        |  secis_index:1     SeB_exonerate category:QUE_U |*|_|*|_|*|_|*|_|*|_|*|_|*|_|*|_
_________________________________|______________________|_________________________________________________________________________________

 Blastx evalue: 2e-31
 Query name: gi|961923427|ref|XP_014861944.1| PREDICTED: selenoprotein M [Poecilia mexicana] >gi|961932824|ref|XP_014911454.1| PREDICTED: selenoprotein M [Poecilia latipinna] >gi|1025472594|ref|XP_007572174.2| PREDICTED: selenoprotein M [Poecilia formosa] >gi|1039407491|ref|XP_008416816.2| PREDICTED: selenoprotein M [Poecilia reticulata]
 Query range: 1-158  (total 158)

 Target: /data/www-rg/seblastian_results/185559677/tempfiles/temptarget.fasta
 Chromosome: JXSJ01000037.1:subseq_972323,101357_ Strand: -
 Positions:
 -Exon 1  52456        52551
 -Exon 2  51670        51705
 -Exon 3  51473        51507
 -Exon 4  51274        51352
 -Exon 5  49919        50137

 Redox box: YES

Query   MWLIVLASFLHCASAYDVDLQKLDGLAKARVE <---Intron---> TCGGUQLNRLRE <---Intron---> VKAFVMQDIPLY <---Intron-
        |||||||| | |||||||||/||||||||||| <   750bp    > |||||||||||| <   162bp    > |||||/|||||| <   120bp  
Target  MWLIVLASLLQCASAYDVDLKKLDGLAKARVE                TCGGUQLNRLRE                VKAFVVQDIPLY            
        atcagtgatcctgtgtgggcaacggcgagagg                atggtccaacag                gagtggcgacct            
        tgttttcgttagcccaatataatagtcacgta                cggggatagtga                tactttaatcta            
        gggaggctatgccgcctgtggagcggaagggg                actaaggcgcag                cactgcgcttt             
                                                            *                                               

Query   --> HNLVMKHIPGADPELVLLNHYYEELD <---Intron---> RIALTDMTRSEINELLEKLGFYKKAQPEDEVPEEFRFAPAKDSPFKDERPFKSS
          > |||||||||||||||||||||||||| <   1136bp   > ||||/||||||||||||||||||||| ||||||||||/|||||||||  |/|||
Target      HNLVMKHIPGADPELVLLNHYYEELD                RIALSDMTRSEINELLEKLGFYKKAQAEDEVPEEFRFSPAKDSPFKDAPPYKSS
            cacgaacacgggcgcgccacttggcg                cagctgaactgaagccgacgttaagcgggggcggtcttcgagactaggcctatt
            aatttaatcgcacattttaaaaaata                gtctcatcgcataattaatgtaaacacaaatcaatgtcccaagctaacccaacc
           ctcggggtttgcctgtccgcctcaggt                gccgccgcctgccgggggtcccggtatgtgggggtccttcaccgtacgagcacc
                                                                                                            

Query   MSTVDTENASSESNPEVKHTDL
         |// |||   |||  ||||||
Target  TSSLATEN---ESNAAVKHTDL
        attcgaga---gtagggacagc
        ccctccaa---acacctaacat
        tcttcagt---gctaacgttca
                              
 Sequence until next stop: 
TAA
 * 

 Distance CDS-SECIS: 386 ; UGA-SECIS: 740

------- SECIS element -- id:1 -- grade:A ----
 Chromosome = JXSJ01000037.1:subseq_972323,101357_ Strand = - Positions = 49532 - 49451
 Found by:  Infernal (score=34.01) Covels (score=30.47)
 Stem2 length = 11   Apical loop length = 13   Insertion in stem2 = 0, 0
 Free Energy = -24.42

         ..(((((((..........(((((((((((((((...............)))))))))))))))............)))))))..
 model   uucggucaugcg---UuaAUGAcGgccuggcccuAAAcCcuuuuuggggcgggccaggcCuGAUGuu---u-uuucaugaccggc
         .((((((((..........{[[((((((((((((.....--........))))))))))))]]}........-...)))))))).
 target  UACCUGCUGUGAAACUGAAUGAAGCCUCAGGCUGAAAAC--UGUCUGACUGGCCUGAGGUUGAUGCUACAUG-UUCUGGUGGGUU
                            ****           ^^^                       ****