_________________________________.______________________._________________________________________________________________________________
_|*|_|*|_|*|_|*|_|*|_|*|_|*|_|*| |       knownSP        |  secis_index:1     SeB_exonerate category:ALI_U |*|_|*|_|*|_|*|_|*|_|*|_|*|_|*|_
_________________________________|______________________|_________________________________________________________________________________

 Blastx evalue: 4e-48
 Query name: gi|146261167|ref|NP_001078947.1| ethanolaminephosphotransferase 1 [Xenopus laevis]
 Query range: 3-400  (total 401)

 Target: /data/www-rg/seblastian_results/182620141/tempfiles/temptarget.fasta
 Chromosome: JXSJ01000029.1:subseq_3454276,105626_ Strand: -
 Positions:
 -Exon 1  58057        58104
 -Exon 2  55555        55623
 -Exon 3  54980        55087
 -Exon 4  52001        52267
 -Exon 5  50937        51045
 -Exon 6  50809        50857
 -Exon 7  50539        50719
 -Exon 8  50265        50444
 -Exon 9  50000        50107

 Redox box: no

Query   WEYVSPEQLAGFDKYK <---Intron---> YSAVDTNPLSLYVMHPFWNSIVR <---Intron---> FFPTWLAPNLITFSGFLLLVFTFFLMAFF
        /|||/ |||||||||| <   2433bp   > |||||/||||/|||||||| /|/ <   467bp    > | |||||||||||/||/ ||  | //||/
Target  YEYVTQEQLAGFDKYK                YSAVDSNPLSVYVMHPFWNFVVK                FLPTWLAPNLITFTGFMFLVLNFLMLAFY
        tgtgacgccggtgata                tagggtacctgtgaccttatgga                tccattgcacaatagtatcgtatcatgtt
        aaatcaaatcgtaaaa                agctacactctattactgattta                ttccgtccattctcgttttttattttcta
        cacctgggtgcccgcg                ccagcgtcgtcccgcgcgctggg                tgaaggtacctgtaccgctggcctggccc
                                                                                                            

Query   DPGFYAS <---Intron---> APGQVHVPNWVWILAGLLNFTSYTLDGVDGKQARRTNSSTPLGELFDHGLDSWACIFFVVTVYSIFGRGETGVSVLV
        |  | || <   2712bp   >                         /|||||||||||||||||||||||||||||||||| ||||||||||/|| |  
Target  DFDFTAS                ------------------------VDGVDGKQARRTNSSTPLGELFDHGLDSWACIFFVATVYSIFGRGESGVGVAT
        gtgtagt                ------------------------ggggggacgccaattaccggctgcgcgatgtattggagttatgcggaggggga
        atatccc                ------------------------tagtagaacggcacccctgattaagtaggcgttttcctacttgggaggtgtcc
        ctcctct                ------------------------attttcagttccccccaagggtctcgctggccctgcccccatgtgaccatcta
                                                                                                            

Query   LYLLLWVVLFSFILSHWEKYNTGILFLPWGYDLSQV <---Intron---> TISCVYLVTAMVGVEAWYTPAFFNILYRDLFTSMIVG <---Intron
        || /||||||||||||||||||||||||||||/||| <   955bp    > ||| ||||||/|||| || |   / ||||||| ||/  <    79bp 
Target  LYYILWVVLFSFILSHWEKYNTGILFLPWGYDISQV                TISLVYLVTAVVGVETWYQPILLHFLYRDLFTFMIIA           
        cttactggctttactctgataagatttctgtgaacg                aatcgttgaggggggattccactctctagctataaag           
        taattgttttctttcagaaaacgttttcggaatgat                ctcttattccttgtacgaactttattagattctttt            
        gcccgggggcgctaccggatctccgtgggaccccag                ctcctcgcttgccgaagcgacggccctactcctgcc            
                                                                                                            

Query   ---> CALCVTLPMSLYNVFK <---Intron---> AYRDNTLKHGSLYEAMLPIISPVLLFILTTFWIFASPSNILEQHPRLFYFMVGTTFANIT <-
           > |/  |||||||||| | <    89bp    >  /| ||||| ||||| || /|| |||||/| |/  |||||||  || || |||| |||/| < 
Target       CSFTVTLPMSLYNVLK                GHRSNTLKHSSLYEAFLPFLSPFLLFILSTIWVVYSPSNILELQPRTFYLMVGTAFANVT   
             tttagatcaactagca                gccaaacacaactggtcctctctcctattaatggttctaacgcccaattcaggagtgaga   
            cgctctctctgtaatta                gaggactaaggtaacttcttccttttttcctgttacccattatacgctatttgcctcatc   
            ctcttgcacgcccccg                atcctctggcccgcaccgcccttccctcgcatggcctaccccgggcgccccgggaccttcg   
                                                                                                            

Query   --Intron---> CQLIVCQMSNTRCQPLSWLLLPLTLAVGVSVSGVDSQYETLALVMVTVLVTVAHIHYGVNV <---Intron---> VNQLSKHFNI
           94bp    > |/|||||||||||| |||||||/|  | //|/|| /  ||| | / |  | /|||||||/| <   157bp    > | ||| ||||
Target               CKLIVCQMSNTRCQALSWLLLPMTPVVLLAVTGVFAN-ETLLLYLWTAAVILAHIHYGVSV                VQQLSGHFNI
                     tacagtcaaaactcgcatccccaacggttggaggtga-gatcctctagggacgcactggtg                gcccagctaa
                     gatttgatgacggactggtttctccttttctcgttca-actttatgccctttcataagtct                taatggatat
                     tggtgtggtcgtcggccggggcggaggggggcggctc-gcagttggattcaaacacctaag                aagccccccc
                                                                                                            

Query   LPFSLKKPNTDULEEEEKIGLQSAVV
        | |||||||/|| ||||/|||/ | |
Target  LAFSLKKPNSDUQEEEERIGLKEAEV
        cgttcaacaagtcggggcagtagggg
        tctctaacagagaaaaagtgtaacat
        ccccgagcctcagggaaaccgaaggt
                   *              
 Sequence until next stop: 
TAA
 * 

 Distance CDS-SECIS: 1107 ; UGA-SECIS: 1149

------- SECIS element -- id:1 -- grade:A ----
 Chromosome = JXSJ01000029.1:subseq_3454276,105626_ Strand = - Positions = 48892 - 48812
 Found by:  Infernal (score=27.33) Covels (score=25.88)
 Stem2 length = 9   Apical loop length = 18   Insertion in stem2 = 0, 0
 Free Energy = -15.7

         ..(((((((........(((((((((((((((................)))))))))))))))..........)))))))..
 model   uucggucaugcg-UuaAUGAcGgccuggcccuAAAcC-cuuuuuggggcgggccaggcCuGAUGuu-u-uuucaugaccggc
         ..(((({[(........([[(((((({((((..................))))}))))))]])......-...)]}))))..
 target  GUUGCGCAGCGCUUGAAUGAAGAGUGCGUCUAAAAACCGGCAACGGAGCGGACUCACUCUGAGGGAACA-UGCCGUCGCACA
                          ****          ^^^                         ****