_________________________________.______________________._________________________________________________________________________________
_|*|_|*|_|*|_|*|_|*|_|*|_|*|_|*| |       knownSP        |  secis_index:1     SeB_exonerate category:ALI_U |*|_|*|_|*|_|*|_|*|_|*|_|*|_|*|_
_________________________________|______________________|_________________________________________________________________________________

 Blastx evalue: 3e-22
 Query name: gi|1035250417|ref|XP_008325246.2| PREDICTED: selenoprotein H [Cynoglossus semilaevis]
 Query range: 5-101  (total 107)

 Target: /data/www-rg/seblastian_results/276199534/tempfiles/temptarget.fasta
 Chromosome: JXSJ01000003.1:subseq_9649972,98963_ Strand: -
 Positions:
 -Exon 1  50751        50872
 -Exon 2  49830        49986

 Redox box: YES

Query   TGRRGTKRKAEAALEEKPCVEDNKETNSGEEGNGHGGQRVVIEHC <---Intron---> KSURVYGRNAEEVKTAILAAHPELTVILNPEKPRRNSFE
        /||||||||||  /|||  ||///     |/ /    |||||||| <   764bp    > ||||||||||| ||/|/||||| |||/||||||||||||
Target  SGRRGTKRKAE-VVEEKLSVEEDR---GEEKKDDQERQRVVIEHC                KSURVYGRNAEAVKSALLAAHPGLTVVLNPEKPRRNSFE
        tgccgaacagg-ggggactgggga---gggaaggcgacaggagct                aatcgtgcaggggatgccggccgcaggcacgacccaatg
        cggggcagaca-ttaaatctaaag---gaaaaaaaagagtttaag                agggtaggacactaccttccacgtctttacaacggagta
        atttgggtaga-ctggagcgggca---aggggccggaaggctac                tgcaagtgttcgggatccgtcccagtgccctaaccgcccg
                                                                       *                                    

Query   ITLVDGGKGEEDE
        |||/||||||  |
Target  ITLLDGGKGEIQE
        aaccgggaggacg
        tcttaggagataa
        ctggtacatatga
                     
 Sequence until next stop: 
TAA
 * 

 Distance CDS-SECIS: 1961 ; UGA-SECIS: 2108

------- SECIS element -- id:1 -- grade:A ----
 Chromosome = JXSJ01000003.1:subseq_9649972,98963_ Strand = - Positions = 47868 - 47791
 Found by:  Infernal (score=16.15) Covels (score=28.42)
 Stem2 length = 9   Apical loop length = 16   Insertion in stem2 = 0, 0
 Free Energy = -10.38

         ..(((((((.......(((((((((((((((...............)))))))))))))))..........)))))))..
 model   uucggucaugcgUuaAUGAcGgccuggcccuAAAcCcuuuuuggggcgggccaggcCuGAUGuu-u-uuucaugaccggc
         ..({{{(((.......{[[{(((((({(((......-..........)))}))))))}]]}......-...)))}}})..
 target  GCCCACGAAAGCAGUAUGAUGAGGAGAGACCAAUGG-GAUGUUCUCAGUCCCUCCUCUGAUGACCUG-AGCUUCAACGCU
                         ****           ^^                        ****