_________________________________.______________________._________________________________________________________________________________
_|*|_|*|_|*|_|*|_|*|_|*|_|*|_|*| |       knownSP        |  secis_index:1     SeB_exonerate category:ALI_U |*|_|*|_|*|_|*|_|*|_|*|_|*|_|*|_
_________________________________|______________________|_________________________________________________________________________________

 Blastx evalue: 4e-21
 Query name: gi|1042301059|ref|XP_017346835.1| PREDICTED: 15 kDa selenoprotein [Ictalurus punctatus]
 Query range: 1-153  (total 153)

 Target: /data/www-rg/seblastian_results/887854055/tempfiles/temptarget.fasta
 Chromosome: JXSJ01000006.1:subseq_2230275,103608_ Strand: -
 Positions:
 -Exon 1  55144        55191
 -Exon 2  53447        53614
 -Exon 3  50853        50916
 -Exon 4  50307        50356
 -Exon 5  50000        50128

 Redox box: no

Query   MAAEVYLLWLLPLLQS <---Intron---> LAAFGAELSSEACRELGFSSNLLCSSCDLLGQFSLSPIEPFCRQCCQEEAQLESRK <---Intron-
        ||||||||||| |||/ <   1529bp   > |/|/||/||||||||||||||||||||||||/|||/ //| ||||||/|||/|/|| <   2530bp 
Target  MAAEVYLLWLLSLLQT                LSAYGADLSSEACRELGFSSNLLCSSCDLLGEFSLTKLQPGCRQCCQQEAQMEARK            
        aggggtcctcctctca                ctgtgggcttggtagcgttaacctattgccggtacaacccgtccttccggcaggca            
        tccatattgttcttac                tccagcatccacggatgtcgattggcgattgatgtcatacgggaggaaacatacga            
        ggaggtgggggttagg                ggacattggtgacgggcccccggtcctcgcggccccgcgcccggctgggcggagcg            
                                                                                                            

Query   --> LYPGAILEVCGUKLGRFPQVQA <---Intron---> FVRSDKPKMFKGLQIK <---Intron---> YVRGSDPVLKLLDDNGNIAEELSILK
          > || ||||||||||||||||||| <   496bp    > |||||||||||||||| <   178bp    > ||||||||||||||||||||||||||
Target      LYAGAILEVCGUKLGRFPQVQA                FVRSDKPKMFKGLQIK                YVRGSDPVLKLLDDNGNIAEELSILK
            ctgggacggtgtacgatccgcg                tgaagacaatagccaa                tgagtgcgtactggagaagggcaaca
            tacgcttatgggatggtcata                cttggaacattagtata                atggcacttattaaagatcaatgtta
            cttgcccggtaaagggccaca                ttcgtcgaagcgttgcg                ctacattaagtgctcgcctagccccg
                       *                                                                                    

Query   WNTDSVEEFLSEKLDRI
        |||||||||||||||||
Target  WNTDSVEEFLSEKLDRI
        taagagggtcagatgca
        gacagtaattgaatagt
        gcaccaggcgtgaacga
                         
 Sequence until next stop: 
TAG
 * 

 Distance CDS-SECIS: 931 ; UGA-SECIS: 1138

------- SECIS element -- id:1 -- grade:A ----
 Chromosome = JXSJ01000006.1:subseq_2230275,103608_ Strand = - Positions = 49068 - 48993
 Found by:  Infernal (score=37.77) Covels (score=32.04)
 Stem2 length = 9   Apical loop length = 17   Insertion in stem2 = 0, 0
 Free Energy = -18.45

         ..(((((((.......(((((((((((((((...............))))))))))))))).........)))))))..
 model   uucggucaugcgUuaAUGAcGgccuggcccuAAAcCcuuuuuggggcgggccaggcCuGAUGuuu-uuucaugaccggc
         ..((({((((......{[[((((((((((.......--..........))))))))))]]}.....-..))))})))..
 target  CUGAAUCACACAUUAGUGAAGACCUCACAGGAAACC--AAUGUUGGGAUGUGAGGUCUGAUGUAUA-UUUGUGUUUUUU
                         ****           ^^^                       ****