_________________________________.______________________._________________________________________________________________________________
_|*|_|*|_|*|_|*|_|*|_|*|_|*|_|*| |       knownSP        |  secis_index:1     SeB_exonerate category:ALI_U |*|_|*|_|*|_|*|_|*|_|*|_|*|_|*|_
_________________________________|______________________|_________________________________________________________________________________

 Blastx evalue: 4e-28
 Query name: gi|1041116954|ref|XP_017282173.1| PREDICTED: glutathione peroxidase 3 [Kryptolebias marmoratus]
 Query range: 1-219  (total 219)

 Target: /data/www-rg/seblastian_results/595544989/tempfiles/temptarget.fasta
 Chromosome: JXSJ01000010.1:subseq_2769482,101618_ Strand: +
 Positions:
 -Exon 1  48160        48231
 -Exon 2  49997        50147
 -Exon 3  50240        50357
 -Exon 4  50905        51004
 -Exon 5  51412        51630

 Redox box: no

Query   MWTFFPLLLLALPRPC-AGAALTQ <---Intron---> MCDSSADGTIYKYHAKTLNGSHTVNFTDYTGKCVLFVNVATYUGLTLQYVE <---Intr
        ||   ||||| | ||| |||  || <   1765bp   >  |/|/ |||||/| ||||||| ||||/||||/ ||||||||||| | |||| <    92b
Target  MWPVLPLLLLGLLRPCTAGALFTQ                QCESATDGTIYQYSAKTLNGSRTVNFSDYTGESVLFVNVATYUGYTFQYVE         
        atcgtcccccgtccctagggttac                ctgtgaggaatctagaacagacagatagtaggagctgaggattgtatctgg         
        tgcttcttttgttgcgccgcttca                agacccagctaaagcactagggctatgaacgagttttatccaggactaat          
        ggtcaggggctggaccccacacag                gtgacatcctcactcgtacgtctgcctccgcgtcccccgcacaacccgtg          
                                                                                          *                 

Query   on---> LNALHEELKHHGFTVLGFPCNQFGKQEPGQKDEILPGLK <---Intron---> HVRPGNGFVPNFLLFEKGDVNGEAEQEVFTFLK <---
        p    > |||||||/|  | |/|||||||||||||||| ||||||| <   547bp    > |||||||||||||||/||||||/ ||||||||| <   
Target         LNALHEEMKPLGLTILGFPCNQFGKQEPGQKHEILPGLK                HVRPGNGFVPNFLLFDKGDVNGKDEQEVFTFLK     
               cagccggaaccgcaacgtctactgacgcgcacgaccgta                cgacgagtgcatcctgagggagaggcggtatca     
              atactaaatactgtcttgtcgaatgaaacgaaaattcgta                atgcgagttcattttaagatagaaaaattctta     
              agtaatgagattaccccctcccatgagaaggacatgata                gtcaactattaccggtcattgtaacgagtcttcg     
                                                                                                            

Query   Intron---> NSCPPAGADFGAVNGRLFWEPLKISDIKWNFEKFLVGPDGKPVMRWHPRVSVSEVRADIRKYLLQLYTQAIFS
        407bp    > ||||| | /||    ||||/|||/|||||||||||||||||||||||| |//||||/|||||||/|||/ ||/
Target             NSCPPVGDNFGNPTNRLFWQPLKMSDIKWNFEKFLVGPDGKPVMRWHPSVNISEVRSDIRKYLLKLYTKDIFN
                   attccgggatgacaaatttcccaaagaatatgatcggcggacgaatccagaatggctgacatccactaagata
                   acgcctgaatgaccagttgactatgatagataatttgcagacttggacgtatcatgcatgaattatacaatta
                   ccctacaccccccccagcggtgggcccggccagtggcacggaggggcatccttacatcccacgcaacagttct
                                                                                            
 Sequence until next stop: 
TAG
 * 

 Distance CDS-SECIS: 130 ; UGA-SECIS: 589

------- SECIS element -- id:1 -- grade:A ----
 Chromosome = JXSJ01000010.1:subseq_2769482,101618_ Strand = + Positions = 51761 - 51832
 Found by:  Infernal (score=21.25) Covels (score=21.59)
 Stem2 length = 9   Apical loop length = 18   Insertion in stem2 = 0, 0
 Free Energy = -10.97

         ..(((((((.......(((((((((((((((................)))))))))))))))........)))))))..
 model   uucggucaugcgUuaAUGAcGgccuggcccuAAAcC-cuuuuuggggcgggccaggcCuGAUGuuuuuucaugaccggc
         .([({(({(---((..([[((((((((({(..................)})))))))))]])----..)))}))})]).
 target  AUGGCAUGU---UAAAUGAAGAGGAGGCUUGAAAACAGGAAAUCUGUGGUGCCUCUUUUGAG----UCUGAGAUUCAGG
                         ****           ^^^                        ****