_________________________________.______________________._________________________________________________________________________________
_|*|_|*|_|*|_|*|_|*|_|*|_|*|_|*| |       knownSP        |  secis_index:1     SeB_exonerate category:ALI_U |*|_|*|_|*|_|*|_|*|_|*|_|*|_|*|_
_________________________________|______________________|_________________________________________________________________________________

 Blastx evalue: 3e-36
 Query name: gi|928014133|ref|XP_013876265.1| PREDICTED: phospholipid hydroperoxide glutathione peroxidase, mitochondrial [Austrofundulus limnaeus]
 Query range: 23-192  (total 192)

 Target: /data/www-rg/seblastian_results/941002348/tempfiles/temptarget.fasta
 Chromosome: JXSJ01000006.1:subseq_3927178,101606_ Strand: -
 Positions:
 -Exon 1  51737        51834
 -Exon 2  51460        51604
 -Exon 3  51028        51179
 -Exon 4  50194        50218
 -Exon 5  50003        50062
 -Exon 6  49784        49813

 Redox box: no

Query   MCAQVGDWQSAKSIYEFSAKDIDGEEVXLEKYR <---Intron---> GHVCIIVNVASKUGKTRVNYTQLAGMHASYAEKGLRILGFPCNQFGGQ <-
         |||||||||||||||| |||||| || ||||| <   132bp    > | |||||||||||||||||||||||||||||||||||||||||||||| < 
Target  QCAQVGDWQSAKSIYEFCAKDIDGNEVSLEKYR                GDVCIIVNVASKUGKTRVNYTQLAGMHASYAEKGLRILGFPCNQFGGQ   
        ctgcgggtcagatatgttgagaggaggtcgata                gggtaagaggtatgaaagataccggacgttggagtcacgtctactggc   
        agcatgagagcactaatgcaatagaatctaaag                gatgtttatccaggacgtaacatcgtaccacaagtgttgtcgaatgga   
        gttagacggctgaacactcgtttctggctggc                agcgcctataccaaagcgacctgagagcccttgataccgcccccgtaag   
                                                                     *                                      

Query   --Intron---> EPGTDAEIKEFAKGYNAEFDLFSKIEVNGDNAHPLWKWMKSQPKGKGTFGN <---Intron---> NIKWNFTK <---Intron-
          280bp    > |||||||||||||||||||||||||/||||||||||||||/||||||| || <   809bp    > |||||||| <   131bp  
Target               EPGTDAEIKEFAKGYNAEFDLFSKIDVNGDNAHPLWKWMKAQPKGKGTLGN                NIKWNFTK            
                     gcgagggaagtgagtaggtgctaaaggaggagccttataagccagagacga                aaatataa            
                     acgcacataatcagaacatattgatatagaacactgagtacacagagctga                atagatca            
                     gagttaatagccatccagtccctgttgtacttctggggggagtagaacgg                tccagccag            
                                                                                                            

Query   --> FLIDKEGQVVKRYGPTDDPS <---Intron---> VVEKDLPTYM
          > |||//|| |||||||||||| <   189bp    > |||||||||/
Target      FLINREGLVVKRYGPTDDPS                VVEKDLPTYL
            tcaaaggcggactgcaggca                gggagccatc
            tttagagtttagagccaacg                ttaaatccat
            tatcagaagggatcaattct                tgggcatgcg
                                                          
 Sequence until next stop: 
TAA
 * 

 Distance CDS-SECIS: 72 ; UGA-SECIS: 444

------- SECIS element -- id:1 -- grade:A ----
 Chromosome = JXSJ01000006.1:subseq_3927178,101606_ Strand = - Positions = 49711 - 49634
 Found by:  Infernal (score=37.06) Covels (score=36.23)
 Stem2 length = 11   Apical loop length = 15   Insertion in stem2 = 0, 0
 Free Energy = -14.98

         ..(((((((.......(((((((((((((((...............)))))))))))))))............)))))))..
 model   uucggucaugcgUuaAUGAcGgccuggcccuAAAcCcuuuuuggggcgggccaggcCuGAUGuu---u-uuucaugaccggc
         ..(({(({(---(...{[[{((((((((([(...............)])))))))))}]]}........-..))}))}))..
 target  GUGUCUGGA---CUAGUGACGGCCUGUCUGUAAACCCAGCAUUGGGGAGGGCAGGCCUGAUGAUCCAUA-GCGUGCAAACUA
                         ****           ^^^                       ****