________________________________.______________________._________________________________________________________________________________
_|*|_|*|_|*|_|*|_|*|_|*|_|*|_|*| |       knownSP        |  secis_index:1     SeB_exonerate category:ALI_U |*|_|*|_|*|_|*|_|*|_|*|_|*|_|*|_
_________________________________|______________________|_________________________________________________________________________________

 Blastx evalue: 1e-29
 Query name: gi|126009731|gb|ABG54485.2| glutathione peroxidase, partial [Oryzias javanicus]
 Query range: 1-105  (total 105)

 Target: /data/www-rg/seblastian_results/791929575/tempfiles/temptarget.fasta
 Chromosome: JXSJ01000014.1:subseq_1,58329_ Strand: -
 Positions:
 -Exon 1  8420         8517
 -Exon 2  8177         8321
 -Exon 3  7848         7919

 Redox box: no

Query   MSSPTEDWQRATSIYDFNATDIDGNLIPLEKYR <---Intron---> GNVVIITNVASKUGKTVVNYSQFAKMHAAYAERGLRILAFPSNQFGNQ <-
         |/ ||/|| |||||||/|||||||//|||||| <    98bp    > |/||||||||||||||/||||||| /|| ||||||||||||||||||| < 
Target  QSAQTEEWQTATSIYDFSATDIDGNVVPLEKYR                GSVVIITNVASKUGKTLVNYSQFADLHARYAERGLRILAFPSNQFGNQ   
        ctgcaggtcagatatgttgagaggaggccgata                gaggaaaaggtatgaacgattctggtcgatggagtcacgtctactgac   
        accacaagacccctaatcccatagattctaaag                ggttttcatccaggacttaacatcatacgacaggtgttctccaatgaa   
        gttgagagggcgtttccagatttgtgtctaac                gtttcctcctctaatacaacctgtgcgccgttgatacctccttcgtgcg   
                                                                     *                                      

Query   --Intron---> EPGNETQIKEFAESFDAHFDLFSK
          257bp    > |||||||||/||||/   ||/|||
Target               EPGNETQIKQFAESYHVQFDMFSK
                     gcgagacaactggttcgctgataa
                     acgaacataatcacaatatattga
                     gactatgcggtcgctttgtcgctg
                                             
 Sequence until next stop: 
ATTAACGTGAACGGGGACAACGCTCATCCTCTGTGGAAGTGGCTGAAAAACCAGCCCAATGGGAAAGGCTTCCTGGGAAAGTAA
 I  N  V  N  G  D  N  A  H  P  L  W  K  W  L  K  N  Q  P  N  G  K  G  F  L  G  K  * 

 Distance CDS-SECIS: 934 ; UGA-SECIS: 1111

------- SECIS element -- id:1 -- grade:A ----
 Chromosome = JXSJ01000014.1:subseq_1,58329_ Strand = - Positions = 6913 - 6836
 Found by:  Infernal (score=31.5) Covels (score=28.97)
 Stem2 length = 9   Apical loop length = 20   Insertion in stem2 = 0, 0
 Free Energy = -14.29

         ..(((((((........(((((((((((((((................)))))))))))))))........)))))))..
 model   uucggucaugcg-UuaAUGAcGgccuggcccuAAAcC-cuuuuuggggcgggccaggcCuGAUGuuuuuucaugaccggc
         ...({[(((........{[[{(((((((((....................)))))))))}]]}..--....)))]})...
 target  GGUCCAGCCCAGAUUAGUGACGGUCUGUUCAUAAACCCGCACGGCGGACAGAGCAGACCUGAUGA--AAAUGGCGUGCAA
                          ****           ^^^                        ****