_________________________________.______________________._________________________________________________________________________________
_|*|_|*|_|*|_|*|_|*|_|*|_|*|_|*| |       knownSP        |  secis_index:1     SeB_exonerate category:ALI_U |*|_|*|_|*|_|*|_|*|_|*|_|*|_|*|_
_________________________________|______________________|_________________________________________________________________________________

 Blastx evalue: 2e-58
 Query name: gi|1041060680|ref|XP_017265088.1| PREDICTED: glutathione peroxidase 2 [Kryptolebias marmoratus]
 Query range: 1-191  (total 191)

 Target: /data/www-rg/seblastian_results/81392769/tempfiles/temptarget.fasta
 Chromosome: JXSJ01000061.1:subseq_620956,101085_ Strand: +
 Positions:
 -Exon 1  50000        50221
 -Exon 2  50741        51091

 Redox box: no

Query   MSFIAKTFYDLRATSLEGDLVDFNVFRGRVVLIENVASLUGTTTRDFSELNQLQSKYPHRLVVLGFPCNQFGYQ <---Intron---> ENCTNGEILN
        |/||||||||||||/|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| <   519bp    > |||/||||/ 
Target  MTFIAKTFYDLRATTLEGDSVDFNVFRGRVVLIENVASLUGTTTRDFSELNQLQSKYPHRLVVLGFPCNQFGYQ                ENCSNGEIMK
        aatagaattgcagaacgggtggtagtagcggcagaggtctgaaacgtagcacccaatccccggcgtctactgtc                gattaggaaa
        tcttcactaatgccctagactatattgggttttaatcctggcccgatgataatagaacagttttgtcgaatgaa                aagcagatta
        ggcccgccccggccgggactgcttacgaggcgagtgcgcaccccgcccgccgtgcgcctgggcgttctcgtatg                gtccttgcgg
                                               *                                                            

Query   SLHHVRPGGGFKPNFTIFEKCDVNGDNTHPVFAYLKAKLPYPDDDPSSLMQDPKFLVWSPISRTDVSWNFEKFLVGPEGEPFKRYSRKFPTIDIEPDIQR
         | ||||||||/||||||||||||| |||||||||| |||||||||||||||||||/||||/|||||||||||/||||||||||||/|||||||||||||
Target  CLQHVRPGGGFQPNFTIFEKCDVNGTNTHPVFAYLKDKLPYPDDDPSSLMQDPKFLIWSPINRTDVSWNFEKFIVGPEGEPFKRYSKKFPTIDIEPDIQR
        tcccgccgggtccataatgatggagaaaccgtgtcagacctcgggcatcacgcatcatacaaaaggttatgataggcgggctaataaatcaagagcgaca
        gtaatgcgggtacatcttaagatagcacacttcataaatcacaaacgcttaacatttggctagcatcgataatttgcagactagagaatcctatacatag
        cggtgtatcctgcctcctggtcccaacgtactattacgcctctccccccggccatgcgtcccggcctgctgacccgagagttaaccagcccttagtctaa
                                                                                                            

Query   LLRLTKA
        ||||||/
Target  LLRLTKS
        ctataaa
        ttgtcag
        gaaacgc
               
 Sequence until next stop: 
TAA
 * 

 Distance CDS-SECIS: 69 ; UGA-SECIS: 522

------- SECIS element -- id:1 -- grade:B ----
 Chromosome = JXSJ01000061.1:subseq_620956,101085_ Strand = + Positions = 51161 - 51239
 Found by:  Infernal (score=19.95) Covels (score=14.28)
 Stem2 length = 11   Apical loop length = 11   Insertion in stem2 = 0, 0
 Free Energy = -18.65

         ..(((((((.........((((((((((.(((((...............))))).))))))))))............)))))))..
 model   uucggucaugcg--UuaAUGAcGgccug-gcccuAAAcCcuuuuuggggcgggc-caggcCuGAUGuu---u-uuucaugaccggc
         (((((((((.........([[((((((((((((......-..-----...))))))))))))]])........-...)))))))))
 target  CUUUUAAGCCUUAUUAAAUGAGGGUGAUAUUCUGAAAAG-CU-----GAGGGAAUAUUAUCUGAGGCCUUGUA-AGUGCUUAAGAG
                           ****            ^^^                        ****