_________________________________.______________________._________________________________________________________________________________
_|*|_|*|_|*|_|*|_|*|_|*|_|*|_|*| |       knownSP        |  secis_index:1     SeB_exonerate category:ALI_U |*|_|*|_|*|_|*|_|*|_|*|_|*|_|*|_
_________________________________|______________________|_________________________________________________________________________________

 Blastx evalue: 6e-64
 Query name: gi|525343961|ref|NP_001266640.1| glutathione peroxidase [Oreochromis niloticus] >gi|259124047|gb|ACV93251.1| glutathione peroxidase [Oreochromis niloticus]
 Query range: 1-191  (total 191)

 Target: /data/www-rg/seblastian_results/301141612/tempfiles/temptarget.fasta
 Chromosome: JXSJ01000043.1:subseq_1180876,101018_ Strand: -
 Positions:
 -Exon 1  50794        51018
 -Exon 2  50000        50347

 Redox box: no

Query   MAGHLKRFYDLTAKLLSGETLRFSALKDKVVLIENVASLUGTTTRDYTQVNDLHSRYSAEGLVILGVPCNQFGHQ <---Intron---> ENCKNDEIL
        ||| /|||| |||||||||   ||||| |||||||||||||||||||||/|/|||||/|/||||||||||||||| <   446bp    > || ||/|||
Target  MAGGVKRFYGLTAKLLSGELFSFSALKGKVVLIENVASLUGTTTRDYTQMNELHSRYAAKGLVILGVPCNQFGHQ                ENSKNEEIL
        aggggaattgcagacctggttattgcagaggcagaggtctgaaaagtacaagccactggagcgacggctactgcc                gaaaaggac
        tcggtagtagtccattcgattgtcctagattttaatcctggcccgaacataataggaccagttttgtcgaatgaa                aagaaaatt
        gtacgagtcggataggtaagctctagggattctgtcgttaaaacgtctggcgactttgcgacttgttcttgtatg                gccgtgaca
                                               *                                                            

Query   RSLKYVRPGNGFEPKFQLLEKVDVNGKDAHPLFVYLKEKLPFPCDDALGLMNDPKYIIWSPVCRNDVSWNFEKFLVGPDGEPYKRYSRNFLTSDIEADIK
         |||||||||||||||//||||/|||||||||||/||/|| || |||/ |||||/ ||||||||||/||||||||||||||||||||||||| ||| |||
Target  NSLKYVRPGNGFEPKFKILEKVNVNGKDAHPLFVFLKDKLRFPSDDAMALMNDPQCIIWSPVCRNDISWNFEKFLVGPDGEPYKRYSRNFLTIDIEPDIK
        atcatgccgagtgcataacgagagagaggccttgtcagacctcagggagcaagcctaatacgtaagattatgatcggcgggctactaaatcaagagcgaa
        actaatgcgagtacatattaatatagaacactttttaaatgtcgaactcttaacagttggctggaatcgataatttgcagacaagaggattctatacata
        ctggtctagtgtaagcgctgggtgtagtcccatctggcgtactcctcgtcgttagcctgtcctgccccgccggcgctttcgctgcccatccctctgatta
                                                                                                            

Query   QLLKRIK
        /||/|||
Target  ELLERIK
        gccgaaa
        attagta
        gatggca
               
 Sequence until next stop: 
TAA
 * 

 Distance CDS-SECIS: 150 ; UGA-SECIS: 603

------- SECIS element -- id:1 -- grade:A ----
 Chromosome = JXSJ01000043.1:subseq_1180876,101018_ Strand = - Positions = 49849 - 49778
 Found by:  Infernal (score=41.34) Covels (score=28.29)
 Stem2 length = 9   Apical loop length = 16   Insertion in stem2 = 0, 0
 Free Energy = -13.39

         ..(((((((.......(((((((((((((((...............)))))))))))))))........)))))))..
 model   uucggucaugcgUuaAUGAcGgccuggcccuAAAcCcuuuuuggggcgggccaggcCuGAUGuuuuuucaugaccggc
         ..(((((((---....{[[((({(((((((......-..........)))))))})))]]}..--....)))))))..
 target  CCUUUUUAC---UUAAUGAAGACACUUCUUGAAACC-AUUUUUGUGAGAGGAGUUUCUGAUGA--AGCUGUAAAAGAC
                         ****           ^^^                       ****