_________________________________.______________________._________________________________________________________________________________
_|*|_|*|_|*|_|*|_|*|_|*|_|*|_|*| |       knownSP        |  secis_index:1     SeB_exonerate category:ALI_U |*|_|*|_|*|_|*|_|*|_|*|_|*|_|*|_
_________________________________|______________________|_________________________________________________________________________________

 Blastx evalue: 4e-68
 Query name: gi|643357966|gb|AIA98427.1| glutathione peroxidase 1 [Siniperca chuatsi]
 Query range: 4-187  (total 187)

 Target: /data/www-rg/seblastian_results/259789572/tempfiles/temptarget.fasta
 Chromosome: JXSJ01000122.1:subseq_419000,101574_ Strand: -
 Positions:
 -Exon 1  51368        51571
 -Exon 2  49991        50338

 Redox box: no

Query   FYDLTAKLLTGEMFNFSSLQGKVVLIENVASLUGTTTRDYTQMNELHERYASKGLVILGVPCNQFGHQ <---Intron---> ENCKNEEILISLKYIR
        |||| | ||||| ||||||||||||||||||||||||||||||||||/|||||||||||||||||||| <   1029bp   > |||||||||/||||/|
Target  FYDLKANLLTGEAFNFSSLQGKVVLIENVASLUGTTTRDYTQMNELHDRYASKGLVILGVPCNQFGHQ                ENCKNEEILLSLKYVR
        ttgcagactagggtatttccgaggcagaggtctgaaaagtacaagccgctgaagcgacggctactgcc                gataaggacttcatgc
        taatacattcgactatcctagattttaatcctggcccgaacataataagacgagttttgtcgaatgaa                aagaaaatttctaatg
        tcccgcccaaaagttcgcggaatcctgtcgtcatgccgtccggcgctcctctggctcgagcccgcctg                gctgtaaccgtggcct
                                        *                                                                   

Query   PGNGFEPKFQLLEKVDVNGKDAHPLFVFLRETLPFPSDDPTALMNDPKLIMWSPVCRNDVSWNFEKFLIGPDGVPFKRYSRKFLTSDIEGDIKKLLNQAN
        ||||||||||||||||||||||| |||||||/|| |||/| | / ||||//|||||||||/||||||||||||||||||||||||/||||||||||||||
Target  PGNGFEPKFQLLEKVDVNGKDAHSLFVFLRESLPSPSDEPCAFITDPKLVIWSPVCRNDVAWNFEKFLIGPDGVPFKRYSRKFLTNDIEGDIKKLLNQAN
        cgagtgcatcccgagggagaggctctgtcagacctcaggctgtaagcatgatacgtaagggtatgatcagcgggctactaaatcaagagggaaaccacga
        cgagtacatattaatatagaacactttttgagtcccgaacgcttcacatttggctggaatcgataatttgcagtctagaggattcaatagataattaaca
        tatctgagtgcggggtgtagtctcgtgcgaatcaccccggcccttccgaccgcgccgctgggctggcccgctgtccgtccggccctccgaccggcccgac
                                                                                                            
 Sequence until next stop: 
TAA
 * 

 Distance CDS-SECIS: 125 ; UGA-SECIS: 578

------- SECIS element -- id:1 -- grade:A ----
 Chromosome = JXSJ01000122.1:subseq_419000,101574_ Strand = - Positions = 49865 - 49792
 Found by:  Infernal (score=36.01) Covels (score=25.2)
 Stem2 length = 9   Apical loop length = 19   Insertion in stem2 = 0, 0
 Free Energy = -18.81

         ..(((((((.......(((((((((((((((.................)))))))))))))))........)))))))..
 model   uucggucaugcgUuaAUGAcGgccuggcccuAAAcC--cuuuuuggggcgggccaggcCuGAUGuuuuuucaugaccggc
         .((((((((---....{[[((({(((((((...................)))))))})))]]}..--..-.)))))))).
 target  CUCUUUUAC---UAUAUGAAGAAAUCCUCUGAAACCAAGCUAGUUGUGAGGGGGGUAUCUGAUGA--AA-UGUAAAAGAC
                         ****           ^^^                         ****