_________________________________.______________________._________________________________________________________________________________
_|*|_|*|_|*|_|*|_|*|_|*|_|*|_|*| |       knownSP        |  secis_index:1     SeB_exonerate category:ALI_U |*|_|*|_|*|_|*|_|*|_|*|_|*|_|*|_
_________________________________|______________________|_________________________________________________________________________________

 Blastx evalue: e-154
 Query name: gi|530891440|gb|AGT55555.1| deiodinase III [Sciaenops ocellatus]
 Query range: 1-268  (total 268)

 Target: /data/www-rg/seblastian_results/36843757/tempfiles/temptarget.fasta
 Chromosome: JXSJ01000029.1:subseq_1601922,100791_ Strand: +
 Positions:
 -Exon 1  50009        50812

 Redox box: no

Query   MTHDSGGVQMARALKHAALCLMLLPRFLLAAVMLWLLDFLCIRKKVLLKMGERQDSPDDPPVCVSDSNKMFTLESLRAVWYGQKLDFLKSAHLGRAAPNT
        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Target  MTHDSGGVQMARALKHAALCLMLLPRFLLAAVMLWLLDFLCIRKKVLLKMGERQDSPDDPPVCVSDSNKMFTLESLRAVWYGQKLDFLKSAHLGRAAPNT
        aacgtgggcagagcacggctcacccctccgggactccgtttaaaagccaaggacgacggccgtgtgtaaatatgtcaggttgcatgtcatgccgcggcaa
        tcaacggtatcgctaacctgttttcgtttcctttgttattgtgaatttatgagaagcaacctgtcacaattctactgctgagaatattaccatggcccac
        ggcctctcagggggatacgcggggcgccgcctgtgcgtcgctgaagggagagggccgccgggcctcttggccggccgctgccgagctcatgccgctgcct
                                                                                                            

Query   EVMLVQGRRQVRILDCMKGKRPLILNFGSCSUPPFMTRLAAFQRVVSQYADIADFLVVYIEEAHPSDGWVSSDAPYQIPKHRCLEDRLRAAQLMLTEVPG
        |||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Target  EVMLVQDRRQVRILDCMKGKRPLILNFGSCSUPPFMTRLAAFHRVVSQYADIADFLVVYIEEAHPSDGWVSSDAPYQIPKHRCLEDRLRAAQLMLTEVPG
        ggacgcgcacgcacgtaagaaccacatgatttcctaaccggtccggactggaggttggtagggcctggtgatggctcacaccttggacaggccacaggcg
        attttaaggatgttagtagagctttatgggcgccttcgtcctagttgaacatcattttataacaccaggtgcaccaatcaaggtaagtgccatttcatcg
        ggggcgcgggcgcgccgaggagcctctccccagacggcgggtcccgcgcactgctatatcgggtggccggcgctgtgcggcctggcagaatgggccgggg
                                       *                                                                    

Query   SNVVVDNMDNSSNAAYGAYFERLYIVRDERVVYQGGRGPEGYRISELRNWLEQYRNDLVNSKRAVLHV
        /|||||||||||||||||||||||||||||||||||||||||||||||||||||||||/|| ||||||
Target  TNVVVDNMDNSSNAAYGAYFERLYIVRDERVVYQGGRGPEGYRISELRNWLEQYRNDLMNSNRAVLHV
        aaggggaagattaggtggttgactagaggaggtcggagcggtcatgcaatcgctaagcaataaggccg
        catttaataaccaccagcatagtattgaagttaaggggcagagtcatgagtaaagaattacagcttat
        ccgggttgccacccgcacctgatccggtgaggcggcatagacgtcgtacgggacgctggtctaggctg
                                                                            
 Sequence until next stop: 
TAG
 * 

 Distance CDS-SECIS: 423 ; UGA-SECIS: 831

------- SECIS element -- id:1 -- grade:A ----
 Chromosome = JXSJ01000029.1:subseq_1601922,100791_ Strand = + Positions = 51236 - 51308
 Found by:  Infernal (score=31.46) Covels (score=23.1)
 Stem2 length = 11   Apical loop length = 14   Insertion in stem2 = 0, 1
 Free Energy = -19.84

         ..(((((((.......(((((((((((((((...............))))))))).))))))........)))))))..
 model   uucggucaugcgUuaAUGAcGgccuggcccuAAAcCcuuuuuggggcgggccagg-cCuGAUGuuuuuucaugaccggc
         (((((((((---....{[[((((((((((((.....-.........))))))))).)))]]}..--....)))))))))
 target  UCUGGUGUU---UCUGUGAAGUUCGGUUUUUAAAAG-GCGAAGCCAGAAAACCGACACUGAUGA--UUCCGACACCGGG
                         ****           ^^^                        ****