TBLASTN 2.2.30+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.



Database: /export/cursos/20428/BI/genomes/2016/Miichthys_miiuy/genome.fa
           6,294 sequences; 619,300,777 total letters



Query= SPP00002941_2.0 # Protein # selenocysteine lyase (SCLY) # Human

Length=453
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  JXSJ01000121.1 Miichthys miiuy scaffold121, whole genome shotgu...  73.2    3e-29
  JXSJ01000008.1 Miichthys miiuy scaffold8, whole genome shotgun ...  49.3    9e-05


> JXSJ01000121.1 Miichthys miiuy scaffold121, whole genome shotgun 
sequence
Length=790554

 Score = 73.2 bits (178),  Expect(3) = 3e-29, Method: Compositional matrix adjust.
 Identities = 38/62 (61%), Positives = 45/62 (73%), Gaps = 3/62 (5%)
 Frame = -3

Query  206     NETGIVMPVPEISQRIKALNQERVAAGLPPILVHTDAAQALGKQRVDVEDLGVDFLTIVG  265
               N +    PV EI QRIK+LN++R       IL+HTDAAQALGK RVD  +LGVD+LTIVG
Sbjct  198184  NVSSSCQPVQEICQRIKSLNKQREQL---RILLHTDAAQALGKIRVDACELGVDYLTIVG  198014

Query  266     HK  267
               HK
Sbjct  198013  HK  198008


 Score = 68.2 bits (165),  Expect(3) = 3e-29, Method: Compositional matrix adjust.
 Identities = 31/47 (66%), Positives = 37/47 (79%), Gaps = 0/47 (0%)
 Frame = -2

Query  261     LTIVGHKFYGPRIGALYIRGLGEFTPLYPMLFGGGQERNFRPGTENT  307
               L ++  +FY PRIG+LY+ G G  TPLYPMLFGGGQERNFRPG + T
Sbjct  197939  LALLHFQFYAPRIGSLYVNGPGTGTPLYPMLFGGGQERNFRPGYQAT  197799


 Score = 30.8 bits (68),  Expect(3) = 3e-29, Method: Compositional matrix adjust.
 Identities = 13/17 (76%), Positives = 14/17 (82%), Gaps = 0/17 (0%)
 Frame = -1

Query  304     TENTPMIAGLGKAAELV  320
               TENTPMIAGLGK   L+
Sbjct  197691  TENTPMIAGLGKVCFLL  197641


 Score =   120 bits (302),  Expect = 2e-27, Method: Compositional matrix adjust.
 Identities = 78/202 (39%), Positives = 105/202 (52%), Gaps = 70/202 (35%)
 Frame = -1

Query  76      GRKAKDIINAARESLAKMIGGKPQDIIFTSGGTE--------------------------  109
               G KAK +I+ +RE++A+M+GGK +DIIFTSGGTE                          
Sbjct  199719  GVKAKALIHQSRENVARMVGGKAEDIIFTSGGTEVIITVGAFFFFT*QNSFITHATLVHS  199540

Query  110     ------SNNLVIHSVVKHFHAN----QTSKGHTGGHHSPVKGAKPHFITSSVEHDSIRLP  159
                     +NNLV+H+ V+HF  N    +  +GH  G  S      PH IT +VEHDS++L 
Sbjct  199539  KQTFFQANNLVLHTAVEHFRRNCRAAEQGEGHQNGSDSL-----PHIITCNVEHDSVKLV  199375

Query  160     LEHLV-------------------EEQ----------VAAVTFVPVSKVSGQAEVDDILA  190
                E L                    E+Q          V  VTFV VSKV+ + EV+D++A
Sbjct  199374  AEQLQKDGKAGRRPSCKVSFRLIPEDQDTFFIFNYVCVTDVTFVSVSKVTARVEVEDVIA  199195

Query  191     AVRPTTRLVTIMLANNETGIVM  212
               AVRP T L++IMLANNETG++M
Sbjct  199194  AVRPNTCLISIMLANNETGVIM  199129


 Score = 65.1 bits (157),  Expect(2) = 1e-12, Method: Compositional matrix adjust.
 Identities = 32/49 (65%), Positives = 41/49 (84%), Gaps = 0/49 (0%)
 Frame = -1

Query  403     QPSPVLLSYGVPFDVARNALRLSVGRSTTRAEVDLVVQDLKQAVAQLED  451
               +PS +LLS GVP  VA NALRLSVGR TT+A+VD VV+DL++AV +LE+
Sbjct  196803  RPSHILLSCGVPSKVAANALRLSVGRGTTKADVDAVVEDLREAVKRLEE  196657


 Score = 30.8 bits (68),  Expect(2) = 1e-12, Method: Compositional matrix adjust.
 Identities = 16/29 (55%), Positives = 20/29 (69%), Gaps = 0/29 (0%)
 Frame = -3

Query  378     GHVVLAQCRVLMASVGAACHSDHGDQPSP  406
               G  VL+ C  L+ASVGAACHS +  + SP
Sbjct  196948  GWRVLSNCTRLLASVGAACHSGNR*KLSP  196862


 Score = 64.7 bits (156),  Expect = 1e-09, Method: Compositional matrix adjust.
 Identities = 28/49 (57%), Positives = 39/49 (80%), Gaps = 0/49 (0%)
 Frame = -3

Query  39      KVYMDYNATTPLEPEVIQAMTKAMWEAWGNPSSPYSAGRKAKDIINAAR  87
               ++YMDYNATTPLEPEVI+ +++A+ +AWGNPSS Y+AG    ++   AR
Sbjct  200005  RIYMDYNATTPLEPEVIKTISEALQDAWGNPSSNYTAGEGT*NLHQNAR  199859


 Score = 49.7 bits (117),  Expect = 6e-05, Method: Compositional matrix adjust.
 Identities = 20/34 (59%), Positives = 25/34 (74%), Gaps = 0/34 (0%)
 Frame = -3

Query  348     QKRIHLNSQFPGTQRLPNTCNFSIRGPRLQGHVV  381
               + +IH NS +PG+  LPNTCN SI GP LQG V+
Sbjct  197209  KDKIHFNSHYPGSDMLPNTCNVSILGPTLQGDVM  197108


> JXSJ01000008.1 Miichthys miiuy scaffold8, whole genome shotgun 
sequence
Length=7070605

 Score = 49.3 bits (116),  Expect = 9e-05, Method: Compositional matrix adjust.
 Identities = 19/37 (51%), Positives = 28/37 (76%), Gaps = 0/37 (0%)
 Frame = -2

Query  236      ILVHTDAAQALGKQRVDVEDLGVDFLTIVGHKFYGPR  272
                + +HTDAAQA+GK  ++V D  +D ++I GHK YGP+
Sbjct  1637442  VFLHTDAAQAIGKIPINVTDWKIDLMSISGHKIYGPK  1637332


 Score = 46.6 bits (109),  Expect = 6e-04, Method: Compositional matrix adjust.
 Identities = 27/67 (40%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
 Frame = -2

Query  271      PRIGALYIRGLGEFTPLYPMLFGGGQERNFRPGTENTPMIAGLGKAAELVTQNCEAYEAH  330
                P +GALY+R       L P+  GGGQER  R GT  TP+  GLG A  +  Q  E    H
Sbjct  1637100  PGVGALYVRRRPRVR-LEPLQNGGGQERGLRSGTVPTPLAVGLGAACSIAQQEMEVKHTH  1636924

Query  331      MRDVRDY  337
                     D+
Sbjct  1636923  TPKHPDF  1636903



Lambda      K        H        a         alpha
   0.317    0.133    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 67659881744


  Database: /export/cursos/20428/BI/genomes/2016/Miichthys_miiuy/genome.fa
    Posted date:  Oct 21, 2016  4:44 PM
  Number of letters in database: 619,300,777
  Number of sequences in database:  6,294



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 13
Window for multiple hits: 40