TBLASTN 2.2.30+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: /export/cursos/20428/BI/genomes/2016/Miichthys_miiuy/genome.fa 6,294 sequences; 619,300,777 total letters Query= SPP00000628_2.0 # Protein # SECIS binding protein 2 (SBP2) # Zebrafish Length=982 Score E Sequences producing significant alignments: (Bits) Value JXSJ01000001.1 Miichthys miiuy scaffold1, whole genome shotgun ... 151 2e-35 JXSJ01000013.1 Miichthys miiuy scaffold13, whole genome shotgun... 120 4e-26 > JXSJ01000001.1 Miichthys miiuy scaffold1, whole genome shotgun sequence Length=20211669 Score = 151 bits (381), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 71/79 (90%), Positives = 76/79 (96%), Gaps = 0/79 (0%) Frame = +1 Query 622 FREYCNHVLSKEIDESVTLLLQELVRFQERVYQKEPSKAKAKRRLVMGLREVTKHMKLHK 681 F YCN VLSKEIDESVTLLLQELVRFQERVYQK+P+KAK+KRRLVMGLREVTKHMKLHK Sbjct 189196 FCRYCNQVLSKEIDESVTLLLQELVRFQERVYQKDPTKAKSKRRLVMGLREVTKHMKLHK 189375 Query 682 IKCVIISPNCEKIQAKGQN 700 IKCV+ISPNCEKIQAKG+N Sbjct 189376 IKCVVISPNCEKIQAKGKN 189432 Score = 89.7 bits (221), Expect(2) = 1e-25, Method: Compositional matrix adjust. Identities = 63/112 (56%), Positives = 71/112 (63%), Gaps = 13/112 (12%) Frame = +3 Query 58 RQLPMYNS-EHRWQQLNPGPGGPYLAYPILSSPQPPVSSDYATYYHAIMPTPCPPVM--- 113 RQ PMYN E RWQQ NP PGG YLAYPILSSPQPPVS+DYA Y+ IMP PCPPVM Sbjct 183426 RQHPMYNGGELRWQQPNPSPGGSYLAYPILSSPQPPVSNDYA--YYQIMPAPCPPVMGFY 183599 Query 114 -gfyqpfpgpyggpLLNPLS-DCSDRPLQPG-----QTPRARSGARTPVLQK 158 F + GP ++NP+S D S+RPL G + R R RT VL K Sbjct 183600 QPFPGTYTGPVQAGVVNPVSADVSERPLPLGPAYGMASQRGRGMIRTNVLPK 183755 Score = 51.2 bits (121), Expect(2) = 1e-25, Method: Compositional matrix adjust. Identities = 32/45 (71%), Positives = 35/45 (78%), Gaps = 0/45 (0%) Frame = +2 Query 157 QKPMVQPIRAKRPVMRSVAVQKEVCAAGPDGRSKTVLLVDAAQQT 201 Q M QP R +RP RSVAVQKEVC PDGR+KTV+LVDAAQQT Sbjct 183854 QLGMCQPPRGRRPPTRSVAVQKEVCTFVPDGRTKTVMLVDAAQQT 183988 Score = 102 bits (255), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 57/73 (78%), Positives = 63/73 (86%), Gaps = 1/73 (1%) Frame = +3 Query 735 GLFNKLVSLTEEARRAYKEMVSaleqeqaeealKNVKKVPHHMGHSRNPSAASAISFCSV 794 GLFN+LVSLTEEAR+AYK+MVSALEQE E KN KKVP+ MGH RN SAASA+SFCS+ Sbjct 190410 GLFNRLVSLTEEARKAYKDMVSALEQEAEEAQ-KNEKKVPYQMGHYRNHSAASAVSFCSI 190586 Query 795 ISEPISEVNEKEY 807 SEPISEVNEKEY Sbjct 190587 FSEPISEVNEKEY 190625 Score = 92.8 bits (229), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 86/152 (57%), Positives = 101/152 (66%), Gaps = 20/152 (13%) Frame = +1 Query 808 ETNWRTMVENADTLE---SEPILTSRSSREQQDVpsapaqpsananpTIP---------- 854 +TNWR+MVE +D LE +EP S+ Q++ + A + T P Sbjct 190771 DTNWRSMVETSDALEPVEAEPSRPPPSTANQRNGEALATPSIAAPSTTAPQPKAAPLTQG 190950 Query 855 TG-REESRTDDRLEWASQQSTETGSLDGQ----LHssitsttstLVPGMLeeeeeeeeee 909 TG R+E R DDRLE ASQQSTETGSLDG L+SSITSTTSTLVPGMLEE EEE+EEE Sbjct 190951 TGERDEVRVDDRLELASQQSTETGSLDGSCRGPLNSSITSTTSTLVPGMLEEAEEEDEEE 191130 Query 910 eeYSSAP--VPLPALSCRIESWVSKTLENLQL 939 E+Y+ P V +P LS RIESWVSKTLENLQL Sbjct 191131 EDYTPEPISVEVPTLSSRIESWVSKTLENLQL 191226 Score = 79.3 bits (194), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 71/129 (55%), Positives = 79/129 (61%), Gaps = 34/129 (26%) Frame = +1 Query 530 IILQEREVKKGKSSADQSVCEAEEQ-RDTLSFTDTLTQE--------------------- 567 IIL+ERE KKGKSS +Q EE + L FTD L +E Sbjct 187867 IILKEREGKKGKSSVEQESSGQEEHGEECLHFTDDLPREPASQEGMGNSLSSRFTHSFFY 188046 Query 568 ------------QDENGLSVPSDASLSPASQNSPYSITpvsqgspgssgigspmaasaIT 615 +NGLS+PSDASLSPASQNSPYSITPVSQGSP SSGIGSPMA++AIT Sbjct 188047 P*NIF*L*FLLCNTDNGLSMPSDASLSPASQNSPYSITPVSQGSPASSGIGSPMASNAIT 188226 Query 616 KIHSRRFRE 624 KIHSRRFRE Sbjct 188227 KIHSRRFRE 188253 Score = 68.9 bits (167), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 44/68 (65%), Positives = 46/68 (68%), Gaps = 15/68 (22%) Frame = +3 Query 1 QDVKLSAEVEPFIPQKKGVDSSLLPMSLCGEGG--------------AEPTQIPSYLITC 46 QDVKLSAEVEPFIPQKKG++ SL MSL GE G E T IPSYLITC Sbjct 182184 QDVKLSAEVEPFIPQKKGLEGSL-SMSLSGEAGGGVGGGGIGGGTGGVETTPIPSYLITC 182360 Query 47 YPFVQENQ 54 YPFVQENQ Sbjct 182361 YPFVQENQ 182384 Score = 63.9 bits (154), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 35/63 (56%), Positives = 40/63 (63%), Gaps = 2/63 (3%) Frame = +3 Query 470 ISLLGTVGALHSKDGGVCVSGLKSSS--YTPPHNMLDSTAPRIKRGKEREIPKVKKTTAM 527 S +GT H S LK Y+ PHN LDSTAPRIKRGKEREIPKVK+ TA+ Sbjct 187536 FSPVGTTTPFHGSGSTSVPSMLKGHQQPYSAPHNSLDSTAPRIKRGKEREIPKVKRPTAL 187715 Query 528 KKI 530 KK+ Sbjct 187716 KKV 187724 Score = 60.5 bits (145), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 39/61 (64%), Positives = 45/61 (74%), Gaps = 3/61 (5%) Frame = +1 Query 202 DFPGEASGGVRCVSDQVSPQQWKNKPRRRRTsq-qessseqgaseaDIDSDSGYCSPKHN 260 DFPGE SG R +++ SP WKN+ +RRR S E +EQGASEADIDSDSGYCSPKHN Sbjct 184561 DFPGEVSG--RSAAERASPLLWKNRTKRRRASHPGEIYNEQGASEADIDSDSGYCSPKHN 184734 Query 261 Q 261 Sbjct 184735 H 184737 > JXSJ01000013.1 Miichthys miiuy scaffold13, whole genome shotgun sequence Length=5370402 Score = 120 bits (302), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 53/74 (72%), Positives = 67/74 (91%), Gaps = 0/74 (0%) Frame = -2 Query 625 YCNHVLSKEIDESVTLLLQELVRFQERVYQKEPSKAKAKRRLVMGLREVTKHMKLHKIKC 684 YC+ +LSK++DE VT LL+ELVRFQ+R+YQK+P KA+ KRR+VMGLREV KH+KL K+KC Sbjct 207041 YCSQMLSKDVDECVTSLLKELVRFQDRLYQKDPMKARMKRRIVMGLREVLKHLKLRKVKC 206862 Query 685 VIISPNCEKIQAKG 698 VIISPNCE+IQ+KG Sbjct 206861 VIISPNCERIQSKG 206820 Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust. Identities = 19/31 (61%), Positives = 26/31 (84%), Gaps = 0/31 (0%) Frame = -2 Query 500 HNMLDSTAPRIKRGKEREIPKVKKTTAMKKI 530 HN LDST+P +K+GK+RE+PK KK T +KK+ Sbjct 207782 HNPLDSTSPLVKKGKQREVPKAKKPTPLKKV 207690 Lambda K H a alpha 0.314 0.129 0.381 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 174973325378 Database: /export/cursos/20428/BI/genomes/2016/Miichthys_miiuy/genome.fa Posted date: Oct 21, 2016 4:44 PM Number of letters in database: 619,300,777 Number of sequences in database: 6,294 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 13 Window for multiple hits: 40