TBLASTN 2.2.30+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: /export/cursos/20428/BI/genomes/2016/Miichthys_miiuy/genome.fa 6,294 sequences; 619,300,777 total letters Query= SPP00002939_2.0 # Protein # seryl-tRNA synthetase 2, mitochondrial (SARS2) # Human Length=518 Score E Sequences producing significant alignments: (Bits) Value JXSJ01000068.1 Miichthys miiuy scaffold68, whole genome shotgun... 53.9 1e-15 JXSJ01003785.1 Miichthys miiuy scaffold3785, whole genome shotg... 62.4 7e-09 JXSJ01000057.1 Miichthys miiuy scaffold57, whole genome shotgun... 53.5 5e-06 JXSJ01005638.1 Miichthys miiuy scaffold5638, whole genome shotg... 45.4 0.001 > JXSJ01000068.1 Miichthys miiuy scaffold68, whole genome shotgun sequence Length=1617767 Score = 53.9 bits (128), Expect(2) = 1e-15, Method: Compositional matrix adjust. Identities = 31/81 (38%), Positives = 40/81 (49%), Gaps = 28/81 (35%) Frame = +2 Query 179 PVGDESQARVLHMVGDKP----------------------------VFSFQPRGHLEIGE 210 PVGDESQARV+ +VG KP F F+PRGH+E+GE Sbjct 358166 PVGDESQARVVELVGQKPGD*CDL*EQ*SLIILRNLYFSLTSLSAVEFDFKPRGHVELGE 358345 Query 211 KLDIIRQKRLSHVSGHRSYYL 231 +L +IRQ+ LS +YY Sbjct 358346 ELGLIRQR*LSTCCTVCAYYF 358408 Score = 52.4 bits (124), Expect(2) = 1e-15, Method: Compositional matrix adjust. Identities = 23/46 (50%), Positives = 33/46 (72%), Gaps = 0/46 (0%) Frame = +1 Query 133 PKYQGLRARGREIRKELVHLYPREAQLEEQFYLQALKLPNQTHPDV 178 P+Y +GREIR L LYP+E +L+++ Y +AL+LPN +HPDV Sbjct 357907 PEYTQAVQKGREIRNRLNQLYPKETELDQEHYGRALRLPNTSHPDV 358044 Score = 57.8 bits (138), Expect(2) = 5e-11, Method: Compositional matrix adjust. Identities = 25/32 (78%), Positives = 27/32 (84%), Gaps = 0/32 (0%) Frame = +2 Query 320 VRMVCSSTCYRAETNTGQEPRGLYRVHHFTKV 351 R VCSSTCYRAET+TG+E GLYRVHHF KV Sbjct 360167 CRTVCSSTCYRAETDTGRETWGLYRVHHFNKV 360262 Score = 32.7 bits (73), Expect(2) = 5e-11, Method: Compositional matrix adjust. Identities = 13/22 (59%), Positives = 16/22 (73%), Gaps = 0/22 (0%) Frame = +1 Query 300 AEVGLAGYFMDHTVAFRDLPVR 321 A + GYFMDH V ++DLPVR Sbjct 360025 ACLCFPGYFMDHAVNWKDLPVR 360090 Score = 51.2 bits (121), Expect(2) = 2e-10, Method: Compositional matrix adjust. Identities = 20/33 (61%), Positives = 29/33 (88%), Gaps = 0/33 (0%) Frame = +2 Query 418 EVTSASNCTDFQSRRLHIMFQTEAGELQFAHTV 450 +++S SNCTD+QSRRL+I+++ E G LQ+AHTV Sbjct 361448 QISSGSNCTDYQSRRLNILYEREDGSLQYAHTV 361546 Score = 37.0 bits (84), Expect(2) = 2e-10, Method: Compositional matrix adjust. Identities = 15/22 (68%), Positives = 20/22 (91%), Gaps = 0/22 (0%) Frame = +3 Query 450 VNATACAVPRLLIALLESNQQK 471 VNATACA+PR +IA+LE++Q K Sbjct 361641 VNATACAIPRTIIAILETHQTK 361706 Score = 64.7 bits (156), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 34/62 (55%), Positives = 43/62 (69%), Gaps = 3/62 (5%) Frame = +2 Query 270 EGCGMTPNANPSQIYNIDPARFKDLNLAGTAEVGLAGYFMDHTVAFRDLPVRMVCS---S 326 EGCGM PNA+ SQ+Y++DPARF DLNLAGT EVG+AG + +R L +V S + Sbjct 359042 EGCGMQPNAHRSQVYSLDPARFPDLNLAGTGEVGVAGETHFNFFLYRQLNRILVGSWSLA 359221 Query 327 TC 328 TC Sbjct 359222 TC 359227 Score = 49.3 bits (116), Expect(2) = 1e-08, Method: Compositional matrix adjust. Identities = 23/42 (55%), Positives = 29/42 (69%), Gaps = 0/42 (0%) Frame = +2 Query 212 LDIIRQKRLSHVSGHRSYYLRGAGALLQHGLVNFTFNKLLRR 253 + ++ + L+HVSGHRSYYLRG GA LQ L NF + L RR Sbjct 358586 VSVLSCRHLAHVSGHRSYYLRGTGARLQTALQNFALDTLQRR 358711 Score = 33.1 bits (74), Expect(2) = 1e-08, Method: Compositional matrix adjust. Identities = 13/19 (68%), Positives = 16/19 (84%), Gaps = 0/19 (0%) Frame = +3 Query 251 LRRGFTPMTVPDLLRGAVF 269 L +GF PM VPD+L+GAVF Sbjct 358800 LPQGFIPMVVPDMLKGAVF 358856 Score = 62.0 bits (149), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 27/34 (79%), Positives = 31/34 (91%), Gaps = 0/34 (0%) Frame = +3 Query 387 RVLDMPTQELGLPAYRKFDIEAWMPGRGRFGEVT 420 RVLDMPTQELG PA+RK+DIEAWMPGR +GEV+ Sbjct 360717 RVLDMPTQELGPPAHRKYDIEAWMPGRNGYGEVS 360818 Score = 45.4 bits (106), Expect = 0.002, Method: Compositional matrix adjust. Identities = 21/50 (42%), Positives = 31/50 (62%), Gaps = 0/50 (0%) Frame = +3 Query 41 RNLLYEYAREGYSALPQLDIERFCACPEEAAHALELRKGELRSADLPAII 90 R+ LYE+ REGYS P+LD+ C ++ +E RKG+LR D+ I+ Sbjct 356430 RSSLYEHVREGYSDKPELDMRGVCEETDKVIANVENRKGDLRGDDVRKIV 356579 > JXSJ01003785.1 Miichthys miiuy scaffold3785, whole genome shotgun sequence Length=2820 Score = 62.4 bits (150), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 36/141 (26%), Positives = 72/141 (51%), Gaps = 3/141 (2%) Frame = -1 Query 328 CYRAET-NTGQEPRGLYRVHHFTKVEMFGVTGPGleqssqlleeflslqMEILTELGLHF 386 C+R E + G++ +G+ R++ F KVE+ + + L +IL L + Sbjct 2691 CFR*EAGSVGRDIKGMIRLY*FNKVELVKIVYLD*FMNELELLVKDVE--DILNMFELFY 2518 Query 387 RVLDMPTQELGLPAYRKFDIEAWMPGRGRFGEVTSASNCTDFQSRRLHIMFQTEAGELQF 446 RV+++ + ++G A + +D+E ++ E+ NC DF RR+ I F+ GE++ Sbjct 2517 RVVELCSGDIGFSAIKIYDLEV*FFE*NKYREIFFCLNC*DF*VRRM*IRFRDVDGEVKL 2338 Query 447 AHTVNATACAVPRLLIALLES 467 + +N + + RL++ LE+ Sbjct 2337 VYILNGSGVVIDRLIVLFLEN 2275 > JXSJ01000057.1 Miichthys miiuy scaffold57, whole genome shotgun sequence Length=1942065 Score = 53.5 bits (127), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 22/42 (52%), Positives = 28/42 (67%), Gaps = 0/42 (0%) Frame = +1 Query 396 LGLPAYRKFDIEAWMPGRGRFGEVTSASNCTDFQSRRLHIMF 437 L A +K D+EAW P G F E+ S SNCTD+Q+RRL I + Sbjct 304270 LNHAASKKLDLEAWFPASGAFRELVSCSNCTDYQARRLRIRY 304395 Score = 50.1 bits (118), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 25/66 (38%), Positives = 37/66 (56%), Gaps = 1/66 (2%) Frame = +2 Query 287 DPARFKDLNLAGTAEVGLAGYFMDHTVAFRDLPVRMVCSSTCYRAETNT-GQEPRGLYRV 345 D + + L T+E +A + D + DLPVR STC+R E + G++ RG++RV Sbjct 303149 DDSTIDEKYLIATSEQPIAAFLRDEWLKPEDLPVRYAGFSTCFRQEVGSHGRDTRGIFRV 303328 Query 346 HHFTKV 351 H F KV Sbjct 303329 HQFEKV 303346 Score = 40.8 bits (94), Expect = 0.048, Method: Compositional matrix adjust. Identities = 16/45 (36%), Positives = 31/45 (69%), Gaps = 1/45 (2%) Frame = +2 Query 441 AGELQFAHTVNATACAVPRLLIALLESNQQKDGSVLVPPALQSYL 485 A + +F H +NAT CA R++ A+LE+ Q ++G +++P L+ ++ Sbjct 304559 ASQAEFVHMLNATMCATTRVMCAILENYQTEEG-IVIPEKLRDFM 304690 > JXSJ01005638.1 Miichthys miiuy scaffold5638, whole genome shotgun sequence Length=1096 Score = 45.4 bits (106), Expect = 0.001, Method: Compositional matrix adjust. Identities = 21/50 (42%), Positives = 31/50 (62%), Gaps = 0/50 (0%) Frame = +1 Query 41 RNLLYEYAREGYSALPQLDIERFCACPEEAAHALELRKGELRSADLPAII 90 R+ LYE+ REGYS P+LD+ C ++ +E RKG+LR D+ I+ Sbjct 157 RSSLYEHVREGYSDKPELDMRGVCEETDKVIANVENRKGDLRGDDVRKIV 306 Lambda K H a alpha 0.321 0.137 0.411 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 80819208906 Database: /export/cursos/20428/BI/genomes/2016/Miichthys_miiuy/genome.fa Posted date: Oct 21, 2016 4:44 PM Number of letters in database: 619,300,777 Number of sequences in database: 6,294 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 13 Window for multiple hits: 40