Command line: [exonerate -m p2g --showtargetgff -q rpl30_hs.aa.fa.canviat -t genomerpl30_JXSJ01000353.1.fa]
Hostname: [ws101183u]

C4 Alignment:
------------
         Query: SPP00002938_2.0 # Protein # ribosomal protein L30 (RPL30) # Human 
        Target: JXSJ01000353.1:subseq(1,100308) Miichthys miiuy scaffold353, whole genome shotgun sequence:[revcomp]
         Model: protein2genome:local
     Raw score: 538
   Query range: 0 -> 111
  Target range: 50821 -> 48542

     1 : MetValAlaAlaLysLysThr  >>>> Target Intron 1 >>>>  LysLysSerL :    11
         |||||||||||||||||||||            492 bp           |||||||||:
         MetValAlaAlaLysLysThr++                         ++LysLysSerM
 50821 : ATGGTGGCCGCAAAGAAAACGgt.........................agAAAAAGTCCA : 50299

    12 : euGluSerIleAsnSerArgLeuGlnLeuValMetLysSerGlyLysTyrValLeuGlyT :    31
         !!||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
         etGluSerIleAsnSerArgLeuGlnLeuValMetLysSerGlyLysTyrValLeuGlyT
 50298 : TGGAGTCCATCAACTCCCGGCTCCAGCTGGTGATGAAGAGTGGAAAGTACGTCCTGGGCT : 50239

    32 : yrLysGlnThrLeuLysMetIleArgGlnGlyLysAlaLysLeuValIleLeuAlaAsnA :    51
         ||||||||:!!! !||||||||||||||||||||||||||||||||||||||||||||||
         yrLysGlnSerGlnLysMetIleArgGlnGlyLysAlaLysLeuValIleLeuAlaAsnA
 50238 : ACAAACAGTCCCAGAAGATGATCCGTCAGGGCAAAGCCAAGCTGGTCATCCTGGCCAACA : 50179

    52 : snCysProAlaLeu{Ar}  >>>> Target Intron 2 >>>>  {g}LysSerGluI :    60
         ||||||||||||||{||}            608 bp           {|}||||||||||
         snCysProAlaLeu{Ar}++                         ++{g}LysSerGluI
 50178 : ACTGCCCAGCTCTC{AG}gt.........................ag{G}AAATCTGAGA : 49544

    61 : leGluTyrTyrAlaMetLeuAlaLysThrGlyValHisHisTyrSerGlyAsnAsnIleG :    80
         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
         leGluTyrTyrAlaMetLeuAlaLysThrGlyValHisHisTyrSerGlyAsnAsnIleG
 49543 : TTGAGTACTATGCTATGCTGGCCAAGACTGGTGTCCACCACTACAGTGGAAACAACATCG : 49484

    81 : luLeuGlyThrAlaCysGlyLysTyrTyrArgValCysThrLeuAlaIleIleAspPro{ :   100
         |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||{
         luLeuGlyThrAlaCysGlyLysTyrTyrArgValCysThrLeuAlaIleIleAspPro{
 49483 : AGCTCGGCACAGCCTGCGGCAAATACTACAGGGTGTGCACACTGGCTATTATTGACCCT{ : 49424

   101 : G}  >>>> Target Intron 3 >>>>  {ly}AspSerAspIleIleArgSerMetP :   109
         |}            846 bp           {||}|||||||||||||||||||||||||
         G}++                         ++{ly}AspSerAspIleIleArgSerMetP
 49423 : G}gt.........................ag{GC}GATTCTGACATCATCAGGAGCATGC : 48551

   110 : roGluGln :   111
         ||!!:|||
         roAspGln
 48550 : CAGACCAG : 48543

vulgar: SPP00002938_2.0 0 111 . JXSJ01000353.1:subseq(1,100308) 50821 48542 - 538 M 7 21 5 0 2 I 0 488 3 0 2 M 48 144 S 0 2 5 0 2 I 0 604 3 0 2 S 1 1 M 43 129 S 0 1 5 0 2 I 0 842 3 0 2 S 1 2 M 11 33
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2016-11-29
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
JXSJ01000353.1:subseq(1,100308)	exonerate:protein2genome:local	gene	48543	50821	538	-	.	gene_id 1 ; sequence SPP00002938_2.0 ; gene_orientation +
JXSJ01000353.1:subseq(1,100308)	exonerate:protein2genome:local	cds	50801	50821	.	-	.	
JXSJ01000353.1:subseq(1,100308)	exonerate:protein2genome:local	exon	50801	50821	.	-	.	insertions 0 ; deletions 0
JXSJ01000353.1:subseq(1,100308)	exonerate:protein2genome:local	splice5	50799	50800	.	-	.	intron_id 1 ; splice_site "GT"
JXSJ01000353.1:subseq(1,100308)	exonerate:protein2genome:local	intron	50309	50800	.	-	.	intron_id 1
JXSJ01000353.1:subseq(1,100308)	exonerate:protein2genome:local	splice3	50309	50310	.	-	.	intron_id 0 ; splice_site "AG"
JXSJ01000353.1:subseq(1,100308)	exonerate:protein2genome:local	cds	50163	50308	.	-	.	
JXSJ01000353.1:subseq(1,100308)	exonerate:protein2genome:local	exon	50163	50308	.	-	.	insertions 0 ; deletions 0
JXSJ01000353.1:subseq(1,100308)	exonerate:protein2genome:local	splice5	50161	50162	.	-	.	intron_id 2 ; splice_site "GT"
JXSJ01000353.1:subseq(1,100308)	exonerate:protein2genome:local	intron	49555	50162	.	-	.	intron_id 2
JXSJ01000353.1:subseq(1,100308)	exonerate:protein2genome:local	splice3	49555	49556	.	-	.	intron_id 1 ; splice_site "aG"
JXSJ01000353.1:subseq(1,100308)	exonerate:protein2genome:local	cds	49424	49554	.	-	.	
JXSJ01000353.1:subseq(1,100308)	exonerate:protein2genome:local	exon	49424	49554	.	-	.	insertions 0 ; deletions 0
JXSJ01000353.1:subseq(1,100308)	exonerate:protein2genome:local	splice5	49422	49423	.	-	.	intron_id 3 ; splice_site "GT"
JXSJ01000353.1:subseq(1,100308)	exonerate:protein2genome:local	intron	48578	49423	.	-	.	intron_id 3
JXSJ01000353.1:subseq(1,100308)	exonerate:protein2genome:local	splice3	48578	48579	.	-	.	intron_id 2 ; splice_site "AG"
JXSJ01000353.1:subseq(1,100308)	exonerate:protein2genome:local	cds	48543	48577	.	-	.	
JXSJ01000353.1:subseq(1,100308)	exonerate:protein2genome:local	exon	48543	48577	.	-	.	insertions 0 ; deletions 0
JXSJ01000353.1:subseq(1,100308)	exonerate:protein2genome:local	similarity	48543	50821	538	-	.	alignment_id 1 ; Query SPP00002938_2.0 ; Align 50822 1 21 ; Align 50309 8 144 ; Align 49554 57 129 ; Align 48576 101 33
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis