TBLASTN 2.2.30+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.



Database: /export/cursos/20428/BI/genomes/2016/Miichthys_miiuy/genome.fa
           6,294 sequences; 619,300,777 total letters



Query= SPP00002938_2.0 # Protein # ribosomal protein L30 (RPL30) # Human

Length=115
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  JXSJ01000353.1 Miichthys miiuy scaffold353, whole genome shotgu...    100   2e-23
  JXSJ01001704.1 Miichthys miiuy scaffold1704, whole genome shotg...  93.6    4e-21


> JXSJ01000353.1 Miichthys miiuy scaffold353, whole genome shotgun 
sequence
Length=300105

 Score =   100 bits (249),  Expect = 2e-23, Method: Composition-based stats.
 Identities = 45/46 (98%), Positives = 46/46 (100%), Gaps = 0/46 (0%)
 Frame = -1

Query  56     RKSEIEYYAMLAKTGVHHYSGNNIELGTACGKYYRVCTLAIIDPGD  101
              RKSEIEYYAMLAKTGVHHYSGNNIELGTACGKYYRVCTLAIIDPG+
Sbjct  49557  RKSEIEYYAMLAKTGVHHYSGNNIELGTACGKYYRVCTLAIIDPGE  49420


 Score = 93.6 bits (231),  Expect = 4e-21, Method: Compositional matrix adjust.
 Identities = 46/49 (94%), Positives = 48/49 (98%), Gaps = 0/49 (0%)
 Frame = -2

Query  8      KKSLESINSRLQLVMKSGKYVLGYKQTLKMIRQGKAKLVILANNCPALR  56
              KKS+ESINSRLQLVMKSGKYVLGYKQ+ KMIRQGKAKLVILANNCPALR
Sbjct  50309  KKSMESINSRLQLVMKSGKYVLGYKQSQKMIRQGKAKLVILANNCPALR  50163


> JXSJ01001704.1 Miichthys miiuy scaffold1704, whole genome shotgun 
sequence
Length=36476

 Score = 93.6 bits (231),  Expect = 4e-21, Method: Compositional matrix adjust.
 Identities = 46/49 (94%), Positives = 48/49 (98%), Gaps = 0/49 (0%)
 Frame = -1

Query  8      KKSLESINSRLQLVMKSGKYVLGYKQTLKMIRQGKAKLVILANNCPALR  56
              KKS+ESINSRLQLVMKSGKYVLGYKQ+ KMIRQGKAKLVILANNCPALR
Sbjct  32846  KKSMESINSRLQLVMKSGKYVLGYKQSQKMIRQGKAKLVILANNCPALR  32700



Lambda      K        H        a         alpha
   0.317    0.132    0.372    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 5146678300


  Database: /export/cursos/20428/BI/genomes/2016/Miichthys_miiuy/genome.fa
    Posted date:  Oct 21, 2016  4:44 PM
  Number of letters in database: 619,300,777
  Number of sequences in database:  6,294



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 13
Window for multiple hits: 40