Command line: [exonerate -m p2g --showtargetgff -q ptsk_zf.aa.fa.canviat -t genomeptsk_JXSJ01000009.1.fa]
Hostname: [ws116071U]

C4 Alignment:
------------
         Query: SPP00000663_2.0 # Protein # Phosphoseryl-tRNA kinase  (PSTK) # Zebrafish 
        Target: JXSJ01000009.1:subseq(5123684,101310) Miichthys miiuy scaffold9, whole genome shotgun sequence
         Model: protein2genome:local
     Raw score: 328
   Query range: 9 -> 192
  Target range: 50017 -> 51268

    10 : AlaArgAlaCysLeuCysLeuLeuPheGlyLeuProAlaAlaGlyLysSerArgLeuAla :    29
         |||!  ...|||||||||:::|||   ||||||||||||||||||||||||! !||||||
         AlaProValCysLeuCysValLeuCysGlyLeuProAlaAlaGlyLysSerThrLeuAla
 50018 : GCTCcggtctgtctgtgtgtcctctgcGGGCTACCTGCTGCTGGGAAGTCCACGCTGGCC : 50075

    30 : GluGlnLeuArgGlyHisAlaHisSerArgGlyTrpArgThrLeuThrValThrTyrAsp :    49
         ...:!!|||! !.!!  !|||   ..!!.!|||||||||.!!  !  !||| !!||||||
         ArgGluLeuLeuSerThrAlaAlaGlnHisGlyTrpArgAlaGlyLeuValProTyrAsp
 50076 : CGTGAGCTCCTGAGCACCGCTGCACAGCACGGATGGAGAGCTGGTTTGGTTCCGTATGAT : 50135

    50 : LeuLeuIleProGluArgAspTrpArg  >>>> Target Intron 1 >>>>  GlnA :    60
           !||||||||||||!:!! !!::!:!            543 bp           !!..
         AspLeuIleProGluGlnAlaPheGln--                         ++HisT
 50136 : GACCTGATCCCAGAGCAGGCTTTTCAGac.........................agCACA : 50711

    61 : laGluTrpLysGlnHisArgLysThrValLeuAlaCysLeuGluArgPheLeuGlnHisS :    80
         !!|||||||||  !||||||:!!.!!||||||  !|||:!!|||!:!||||||       
         hrGluTrpLysLeuHisArgGlnAlaValLeuArgCysIleGluGlnPheLeu-------
 50712 : CTGAATGGAAGTTACACAGACAAGCAGTTCTGCGGTGCATTGAACAGTTCTTG------- : 50765

    81 : erLeuSerGluGlnThrHisThrLeuProGluThrHisThrLeuCysGluGlnAlaAspA :   100
                 |||:!! !!!!...!||| !!:!!! !!!.!:!  !|||:!!     !  !|
         --------GluLysProGlnValLeuAlaLysMetGlnSerSerCysGlnIleAsnIleA
 50766 : --------GAGAAACCTCAGGTTTTGGCTAAGATGCAGAGCAGCTGTCAGATCAACATCG : 50816

   101 : laGlyValTrpMetArgPheGluGlnLeuLeuArgAspGlnSerValPheLeuSerHisT :   120
         ||!.!  !       !!.!!:!:   ||||||:::   ::!:!!:!!  !! !!!!!!.:
         laAlaTrpGluArgCysIleGlnAlaLeuLeuGlnProGluAlaLeuAspCysThrGlnS
 50817 : CTGCATGGGAACGATGCATTCAagctctgctgcagcctgaAGCTTTGGACTGCACTCAGT : 50876

   121 : hrHisSerGlnProLeuValLeuLeuLeuAspAspAsnPheTyrTyrGlnSerMetArgG :   140
         !!.!...!  !||||||:!!!!!||||||||||||||||||||||||! !||||||||| 
         erGluGlnAlaProLeuLeuPheLeuLeuAspAspAsnPheTyrTyrProSerMetArgT
 50877 : CCGAGCAGGCACCACTTCTGTTTTTACTGGATGACAACTTCTACTATCCAAGCATGAGAT : 50936

   141 : lnGlnIleGlnGlnLeuAlaArgArg{S}  >>>> Target Intron 2 >>>>  {e :   149
         ! :!!:!!!!.||||||||||||!:!{!}            174 bp           { 
         yrGluValHisGlnLeuAlaArgLys{T}++                         ++{y
 50937 : ATGAAGTCCACCAACTTGCGAGAAAG{T}gt.........................ag{A : 51138

   150 : r}ThrCysGlyPheCysGlnValPheLeuGlnCysSerLeuGlyValCysValGlnArgA :   169
         !}:!!   |||||||||||||||!:!|||!!.|||..!|||! !  !|||:!!...||||
         r}SerLeuGlyPheCysGlnValTyrLeuHisCysAspLeuGluSerCysIleSerArgA
 51139 : T}TCGCTGGGTTTCTGCCAGGTGTATCTTCACTGTGATTTGGAGTCCTGCATCAGCAGAA : 51197

   170 : snArgLeuArgValArgProLeuProAspAlaValLeuLeuGlnMetSerGluArgLeuG :   189
         ||!:!  !|||  !..!|||:!!|||  !! !|||:!!:!!:!!|||  !:!!|||||||
         snGlnSerArgSerGluProIleProThrGluValIleValGluMetValLysArgLeuG
 51198 : ACCAGAGCAGGTCTGAACCCATTCCCACTGAGGTGATAGTGGAGATGGTGAAGCGTTTGG : 51257

   190 : luProProAsp :   192
         || !!|||:!!
         luSerProAsn
 51258 : AGTCTCCAAAT : 51268

vulgar: SPP00000663_2.0 9 192 . JXSJ01000009.1:subseq(5123684,101310) 50017 51268 + 328 M 49 147 5 0 2 I 0 539 3 0 2 M 19 57 G 5 0 M 66 198 S 0 1 5 0 2 I 0 170 3 0 2 S 1 2 M 43 129
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2016-11-18
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
JXSJ01000009.1:subseq(5123684,101310)	exonerate:protein2genome:local	gene	50018	51268	328	+	.	gene_id 1 ; sequence SPP00000663_2.0 ; gene_orientation +
JXSJ01000009.1:subseq(5123684,101310)	exonerate:protein2genome:local	cds	50018	50164	.	+	.	
JXSJ01000009.1:subseq(5123684,101310)	exonerate:protein2genome:local	exon	50018	50164	.	+	.	insertions 0 ; deletions 0
JXSJ01000009.1:subseq(5123684,101310)	exonerate:protein2genome:local	splice5	50165	50166	.	+	.	intron_id 1 ; splice_site "AC"
JXSJ01000009.1:subseq(5123684,101310)	exonerate:protein2genome:local	intron	50165	50707	.	+	.	intron_id 1
JXSJ01000009.1:subseq(5123684,101310)	exonerate:protein2genome:local	splice3	50706	50707	.	+	.	intron_id 0 ; splice_site "AG"
JXSJ01000009.1:subseq(5123684,101310)	exonerate:protein2genome:local	cds	50708	50963	.	+	.	
JXSJ01000009.1:subseq(5123684,101310)	exonerate:protein2genome:local	exon	50708	50963	.	+	.	insertions 0 ; deletions 5
JXSJ01000009.1:subseq(5123684,101310)	exonerate:protein2genome:local	splice5	50964	50965	.	+	.	intron_id 2 ; splice_site "GT"
JXSJ01000009.1:subseq(5123684,101310)	exonerate:protein2genome:local	intron	50964	51137	.	+	.	intron_id 2
JXSJ01000009.1:subseq(5123684,101310)	exonerate:protein2genome:local	splice3	51136	51137	.	+	.	intron_id 1 ; splice_site "AG"
JXSJ01000009.1:subseq(5123684,101310)	exonerate:protein2genome:local	cds	51138	51268	.	+	.	
JXSJ01000009.1:subseq(5123684,101310)	exonerate:protein2genome:local	exon	51138	51268	.	+	.	insertions 0 ; deletions 0
JXSJ01000009.1:subseq(5123684,101310)	exonerate:protein2genome:local	similarity	50018	51268	328	+	.	alignment_id 1 ; Query SPP00000663_2.0 ; Align 50018 10 147 ; Align 50708 59 57 ; Align 50765 83 198 ; Align 51140 150 129
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis