TBLASTN 2.2.30+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.



Database: /export/cursos/20428/BI/genomes/2016/Miichthys_miiuy/genome.fa
           6,294 sequences; 619,300,777 total letters



Query= SPP00000663_2.0 # Protein # Phosphoseryl-tRNA kinase  (PSTK) #
Zebrafish

Length=205
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  JXSJ01000009.1 Miichthys miiuy scaffold9, whole genome shotgun ...  71.2    8e-13


> JXSJ01000009.1 Miichthys miiuy scaffold9, whole genome shotgun 
sequence
Length=6752331

 Score = 71.2 bits (173),  Expect = 8e-13, Method: Compositional matrix adjust.
 Identities = 57/205 (28%), Positives = 87/205 (42%), Gaps = 66/205 (32%)
 Frame = +1

Query  61       EWKQHRKTVLACLERFLQHSLSEQTHTLPETHTLCEQADAGVWMR-FEQLLRDQSVFLSH  119
                EWK HR+ VL C+E+FL     E+   L +  + C Q +   W R  + LL+ +++  + 
Sbjct  5174398  EWKLHRQAVLRCIEQFL-----EKPQVLAKMQSSC-QINIAAWERCIQALLQPEALDCTQ  5174559

Query  120      THSQPLVLLLDDNFYYQSMRQQIQQLARR---STCG------------------------  152
                +   PL+ LLDDNFYY SMR ++ QLAR+   S C                         
Sbjct  5174560  SEQAPLLFLLDDNFYYPSMRYEVHQLARKCKHSVCSL*AISLNVHEETHL*FYVVYL*KL  5174739

Query  153      --------------------FCQVFLQCSLGVC-----------VQRNRLRVRPLPDAVL  181
                                     C  F   SLG C           + RN+ R  P+P  V+
Sbjct  5174740  E*NGQNCLHAFFNIVLLVELICLSFSLDSLGFCQVYLHCDLESCISRNQSRSEPIPTEVI  5174919

Query  182      LQMSERLEPPD-SRDKHSLTLVAVN  205
                ++M +RLE P+  ++      ++VN
Sbjct  5174920  VEMVKRLESPNPQKNSWEANSISVN  5174994


 Score = 53.9 bits (128),  Expect = 3e-07, Method: Compositional matrix adjust.
 Identities = 30/57 (53%), Positives = 36/57 (63%), Gaps = 2/57 (4%)
 Frame = +1

Query  2        AGVSPMSPARACLCLLFGLPAAGKSRLAEQLRGHAHSRGWRTLTVTYDLLIPERDWR  58
                AGV   +P   CLC+L GLPAAGKS LA +L   A   GWR   V YD LIPE+ ++
Sbjct  5173684  AGVVGRAPV--CLCVLCGLPAAGKSTLARELLSTAAQHGWRAGLVPYDDLIPEQAFQ  5173848



Lambda      K        H        a         alpha
   0.325    0.135    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 18513880380


  Database: /export/cursos/20428/BI/genomes/2016/Miichthys_miiuy/genome.fa
    Posted date:  Oct 21, 2016  4:44 PM
  Number of letters in database: 619,300,777
  Number of sequences in database:  6,294



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 13
Window for multiple hits: 40