TBLASTN 2.2.30+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: /export/cursos/20428/BI/genomes/2016/Miichthys_miiuy/genome.fa 6,294 sequences; 619,300,777 total letters Query= SPP00000647_2.0 # Protein # Methionine-R-sufoxide reductase 3 (MSRB3) # Zebrafish Length=186 Score E Sequences producing significant alignments: (Bits) Value JXSJ01000328.1 Miichthys miiuy scaffold328, whole genome shotgu... 74.3 7e-14 JXSJ01000042.1 Miichthys miiuy scaffold42, whole genome shotgun... 56.6 3e-08 JXSJ01000046.1 Miichthys miiuy scaffold46, whole genome shotgun... 37.7 1e-06 JXSJ01000015.1 Miichthys miiuy scaffold15, whole genome shotgun... 48.5 1e-05 > JXSJ01000328.1 Miichthys miiuy scaffold328, whole genome shotgun sequence Length=324763 Score = 74.3 bits (181), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 31/38 (82%), Positives = 36/38 (95%), Gaps = 0/38 (0%) Frame = -1 Query 24 PSGTCRSKKTWPKTFPEEELRKRLTPMQYHVTQQKGTE 61 PSG CRSKKTWP +FP+EELRKRLTP+QYHVTQ++GTE Sbjct 136564 PSGACRSKKTWPVSFPQEELRKRLTPIQYHVTQERGTE 136451 Score = 74.3 bits (181), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 37/60 (62%), Positives = 42/60 (70%), Gaps = 3/60 (5%) Frame = -3 Query 130 QCGAHLGHLFDDGPRPTKKRYCINSASLSFQPKN---SATEEVEASGAAGQSSTSKNEEL 186 QCGAHLGHLFDDGP+PT KRYCINSASL+FQPK S + + GAA S + EL Sbjct 132251 QCGAHLGHLFDDGPKPTGKRYCINSASLAFQPKQENLSTSSSADEGGAACNSVGNGKTEL 132072 Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 29/42 (69%), Positives = 35/42 (83%), Gaps = 2/42 (5%) Frame = -2 Query 97 SGWPSFFDLINKDAIAQTDDFSYGMHRVETTCSQCGAHLGHL 138 SGWPSFFDL+ +++I ++DDFSYGMHRVETTCSQ H HL Sbjct 134400 SGWPSFFDLVKEESITRSDDFSYGMHRVETTCSQ--VHYKHL 134281 Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 19/26 (73%), Positives = 24/26 (92%), Gaps = 0/26 (0%) Frame = -1 Query 1 MSGFNLLHLVSQGQPVKLKACGLPSG 26 MSGFNLLHL+++GQPV L++C LPSG Sbjct 137920 MSGFNLLHLITKGQPVALRSCSLPSG 137843 Score = 43.1 bits (100), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 20/42 (48%), Positives = 24/42 (57%), Gaps = 0/42 (0%) Frame = -1 Query 46 RLTPMQYHVTQQKGTESAFTGKYVDNKEEGTYHCVVCGAPLF 87 R + H SAFTG++ K+EGTY CVVCGA LF Sbjct 135124 RAVNIDIHYVDPLTLHSAFTGEFAHYKDEGTYTCVVCGATLF 134999 > JXSJ01000042.1 Miichthys miiuy scaffold42, whole genome shotgun sequence Length=2593000 Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 23/46 (50%), Positives = 31/46 (67%), Gaps = 0/46 (0%) Frame = +2 Query 117 FSYGMHRVETTCSQCGAHLGHLFDDGPRPTKKRYCINSASLSFQPK 162 F + M V QC AHLGH+FDDGP P +R+CINS +L+F+ + Sbjct 399359 FGFLMTFVCVFLMQCDAHLGHVFDDGPEPAGQRFCINSVALTFKAR 399496 > JXSJ01000046.1 Miichthys miiuy scaffold46, whole genome shotgun sequence Length=2451071 Score = 37.7 bits (86), Expect(2) = 1e-06, Method: Compositional matrix adjust. Identities = 17/53 (32%), Positives = 31/53 (58%), Gaps = 2/53 (4%) Frame = -3 Query 75 GTYHCVVCGAPLFMSEKKFDSGSGWPSFFDLINKDAIAQTDDF--SYGMHRVE 125 G Y C C LF S K++ S WP+F + I +D++++ ++ +Y +H +E Sbjct 2418156 GIYVCAKCEHQLFSSHSKYEHSSPWPAFTETILEDSVSKHEERPGAYKVHLIE 2417998 Score = 35.0 bits (79), Expect(2) = 1e-06, Method: Compositional matrix adjust. Identities = 18/39 (46%), Positives = 23/39 (59%), Gaps = 1/39 (3%) Frame = -2 Query 125 ETTCSQCGAHLGHLF-DDGPRPTKKRYCINSASLSFQPK 162 + C +CG LGH F +DGP R+ I S+SL F PK Sbjct 2417884 QVRCGKCGNGLGHEFVNDGPAKGLSRF*IFSSSLKFIPK 2417768 Score = 40.8 bits (94), Expect = 0.005, Method: Compositional matrix adjust. Identities = 18/59 (31%), Positives = 31/59 (53%), Gaps = 0/59 (0%) Frame = -1 Query 55 TQQKGTESAFTGKYVDNKEEGTYHCVVCGAPLFMSEKKFDSGSGWPSFFDLINKDAIAQ 113 + G+ F + + G Y C CG LF S KF+ S WP+F + I++D++++ Sbjct 2416169 IRNHGSFFFFVHSLILSSSSGVYVCSECGHELFSSTSKFEHSSPWPAFSETIHEDSVSK 2415993 > JXSJ01000015.1 Miichthys miiuy scaffold15, whole genome shotgun sequence Length=4954414 Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 36/126 (29%), Positives = 47/126 (37%), Gaps = 39/126 (31%) Frame = -1 Query 75 GTYHCVVCGAPLFMSEKKFDSGSGWPSFFDLINKDAIAQTDD----FSYGMHR------- 123 G Y C C PLF S KF S WP+F D I +D++ + + F H Sbjct 2036248 GIYVCSQCNHPLFSSRSKFAHSSPWPAFTDTIREDSVTKMMETLTAFKVRNHNLSSYMFY 2036069 Query 124 ---------------------------VETTCSQCGAHLGHLF-DDGPRPTKKRYCINSA 155 ++ C +CG LGH F +DGP R+ I S Sbjct 2036068 YWFLFVLL*NICSSGYGT*AGCDCVSCIQVLCGKCGNGLGHEFVNDGPEEGVSRF*IFSH 2035889 Query 156 SLSFQP 161 SL F P Sbjct 2035888 SLKFVP 2035871 Lambda K H a alpha 0.314 0.130 0.398 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 15017733010 Database: /export/cursos/20428/BI/genomes/2016/Miichthys_miiuy/genome.fa Posted date: Oct 21, 2016 4:44 PM Number of letters in database: 619,300,777 Number of sequences in database: 6,294 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 13 Window for multiple hits: 40