TBLASTN 2.2.30+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.



Database: /export/cursos/20428/BI/genomes/2016/Miichthys_miiuy/genome.fa
           6,294 sequences; 619,300,777 total letters



Query= SPP00000646_2.0 # Protein # Methionine-R-sufoxide reductase 2
(MSRB2) # Zebrafish

Length=180
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  JXSJ01000042.1 Miichthys miiuy scaffold42, whole genome shotgun...  93.2    4e-20
  JXSJ01000328.1 Miichthys miiuy scaffold328, whole genome shotgu...  57.8    1e-08


> JXSJ01000042.1 Miichthys miiuy scaffold42, whole genome shotgun 
sequence
Length=2593000

 Score = 93.2 bits (230),  Expect = 4e-20, Method: Compositional matrix adjust.
 Identities = 42/59 (71%), Positives = 49/59 (83%), Gaps = 0/59 (0%)
 Frame = +3

Query  93      SPLFSSEAKYDAGAGWPSFCEAHGTWEKDESHANIVRRPDNSLGSTGTEVICKHCDAHL  151
               S L SSEAKYD+G GWP+F EAHGTWE+DESH +I+RRPDNSLGS GTEV+CK+    L
Sbjct  398964  SYLDSSEAKYDSGTGWPAFKEAHGTWERDESHTSIIRRPDNSLGSAGTEVLCKNVSFQL  399140


 Score = 72.4 bits (176),  Expect = 3e-13, Method: Composition-based stats.
 Identities = 37/70 (53%), Positives = 46/70 (66%), Gaps = 10/70 (14%)
 Frame = +2

Query  34      ISSSTGLQSLTRYDQSTDWQRKLSPEQYVVTREKGTEV--PFSGIYLNHNEVGMYHCVCC  91
               +S S GLQSLTRYD+ TDWQ+KL+PEQYVVTRE+GTEV    + +Y+N         V C
Sbjct  398177  LSLSAGLQSLTRYDEITDWQKKLTPEQYVVTRERGTEVVSAANSMYIN--------TVIC  398332

Query  92      DSPLFSSEAK  101
                 PL S   +
Sbjct  398333  VQPLLSHTTR  398362


 Score = 68.6 bits (166),  Expect = 5e-12, Method: Composition-based stats.
 Identities = 28/37 (76%), Positives = 30/37 (81%), Gaps = 0/37 (0%)
 Frame = +2

Query  142     VICKHCDAHLGHVFEDGPDPTGQRFCINSVALNFKPR  178
               V    CDAHLGHVF+DGP+P GQRFCINSVAL FK R
Sbjct  399386  VFLMQCDAHLGHVFDDGPEPAGQRFCINSVALTFKAR  399496


 Score = 60.1 bits (144),  Expect = 3e-09, Method: Composition-based stats.
 Identities = 23/25 (92%), Positives = 25/25 (100%), Gaps = 0/25 (0%)
 Frame = +3

Query  72      PFSGIYLNHNEVGMYHCVCCDSPLF  96
               PFSGIYLNH+EVGMYHCVCCD+PLF
Sbjct  398649  PFSGIYLNHSEVGMYHCVCCDAPLF  398723


> JXSJ01000328.1 Miichthys miiuy scaffold328, whole genome shotgun 
sequence
Length=324763

 Score = 57.8 bits (138),  Expect = 1e-08, Method: Compositional matrix adjust.
 Identities = 21/34 (62%), Positives = 30/34 (88%), Gaps = 0/34 (0%)
 Frame = -3

Query  147     CDAHLGHVFEDGPDPTGQRFCINSVALNFKPREK  180
               C AHLGH+F+DGP PTG+R+CINS +L F+P+++
Sbjct  132248  CGAHLGHLFDDGPKPTGKRYCINSASLAFQPKQE  132147



Lambda      K        H        a         alpha
   0.318    0.134    0.421    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 13783398790


  Database: /export/cursos/20428/BI/genomes/2016/Miichthys_miiuy/genome.fa
    Posted date:  Oct 21, 2016  4:44 PM
  Number of letters in database: 619,300,777
  Number of sequences in database:  6,294



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 13
Window for multiple hits: 40