Command line: [exonerate -m p2g --showtargetgff -q msrb1b_zf.aa.fa.canviat -t genomemsrb1b_JXSJ01000015.1.fa]
Hostname: [ws101071u]

C4 Alignment:
------------
         Query: SPP00000644_2.0 # Protein # Methionine-R-sufoxide reductase 1b (MSRB1b) # Zebrafish 
        Target: JXSJ01000015.1:subseq(1987319,98552) Miichthys miiuy scaffold15, whole genome shotgun sequence:[revcomp]
         Model: protein2genome:local
     Raw score: 506
   Query range: 0 -> 103
  Target range: 50000 -> 48551

     1 : MetSerPheCysSerPhePheGlyLysGluPheTyrLysAspHisPheLysPro{G}  > :    19
         ||||||||||||..!|||||||||   ||| ! |||||||||||||||||||||{|}   
         MetSerPheCysGlnPhePheGlyGlyGluValTyrLysAspHisPheLysPro{G}++ 
 50000 : atgTCCTTCTGTCAGTTCTTTGGCGGTGAGGTGTACAAGGATCATTTCAAACCA{G}gt. : 49943

    20 : >>> Target Intron 1 >>>>  {ly}IleTyrAlaCysSerGlnCysGlyHisPro :    29
                 1017 bp           {||}||||||!.!||||||||||||..!||||||
                                 ++{ly}IleTyrValCysSerGlnCysAsnHisPro
 49942 : ........................ag{GT}ATTTATGTGTGTTCCCAGTGTAACCATCCG : 48899

    30 : LeuPheSerSerArgSerLysTyrGluHisSerSerProTrpProAlaPheThrGluThr :    49
         |||||||||||||||||||||!:!!  |||||||||||||||||||||||||||!!:|||
         LeuPheSerSerArgSerLysPheAlaHisSerSerProTrpProAlaPheThrAspThr
 48898 : CTGTTCTCCAGTCGGTCCAAGTTCGCCCACTCGTCTCCTTGGCCGGCTTTTACTGACACC : 48839

    50 : IleArgGluAspSerValThrLysMetMetGluThrLeuThrAlaTyrLys  >>>> Ta :    67
         |||||||||||||||||||||||||||||||||||||||||||||!:!|||         
         IleArgGluAspSerValThrLysMetMetGluThrLeuThrAlaPheLys++       
 48838 : ATCAGAGAGGACAGCGTCACCAAGATGATGGAGACTCTCACTGCCTTCAAGgt....... : 48783

    68 : rget Intron 2 >>>>  ValLeuCysGlyLysCysGlyAsnGlyLeuGlyHisGluP :    80
            123 bp           ||||||||||||||||||||||||||||||||||||||||
                           ++ValLeuCysGlyLysCysGlyAsnGlyLeuGlyHisGluP
 48782 : ..................agGTTCTCTGTGGCAAGTGTGGCAACGGGCTGGGCCATGAGT : 48623

    81 : heLeuAsnAspGlyProGluGluGlyLeuSerArgPheUnkIlePheSerHisSerLeuL :   100
         ||:!!|||||||||||||||||||||:!!|||||||||   |||||||||||||||||||
         heValAsnAspGlyProGluGluGlyValSerArgPhe***IlePheSerHisSerLeuL
 48622 : TTGTAAATGACGGCCCAGAGGAAGGAGTTTCACGTTTTTGAATATTCAGCCACTCGCTCA : 48563

   101 : ysPheValPro :   103
         |||||||||||
         ysPheValPro
 48562 : AGTTTGTCCCC : 48552

vulgar: SPP00000644_2.0 0 103 . JXSJ01000015.1:subseq(1987319,98552) 50000 48551 - 506 M 18 54 S 0 1 5 0 2 I 0 1013 3 0 2 S 1 2 M 47 141 5 0 2 I 0 119 3 0 2 M 37 111
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2016-11-22
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
JXSJ01000015.1:subseq(1987319,98552)	exonerate:protein2genome:local	gene	48552	50000	506	-	.	gene_id 1 ; sequence SPP00000644_2.0 ; gene_orientation +
JXSJ01000015.1:subseq(1987319,98552)	exonerate:protein2genome:local	cds	49946	50000	.	-	.	
JXSJ01000015.1:subseq(1987319,98552)	exonerate:protein2genome:local	exon	49946	50000	.	-	.	insertions 0 ; deletions 0
JXSJ01000015.1:subseq(1987319,98552)	exonerate:protein2genome:local	splice5	49944	49945	.	-	.	intron_id 1 ; splice_site "GT"
JXSJ01000015.1:subseq(1987319,98552)	exonerate:protein2genome:local	intron	48929	49945	.	-	.	intron_id 1
JXSJ01000015.1:subseq(1987319,98552)	exonerate:protein2genome:local	splice3	48929	48930	.	-	.	intron_id 0 ; splice_site "AG"
JXSJ01000015.1:subseq(1987319,98552)	exonerate:protein2genome:local	cds	48786	48928	.	-	.	
JXSJ01000015.1:subseq(1987319,98552)	exonerate:protein2genome:local	exon	48786	48928	.	-	.	insertions 0 ; deletions 0
JXSJ01000015.1:subseq(1987319,98552)	exonerate:protein2genome:local	splice5	48784	48785	.	-	.	intron_id 2 ; splice_site "GT"
JXSJ01000015.1:subseq(1987319,98552)	exonerate:protein2genome:local	intron	48663	48785	.	-	.	intron_id 2
JXSJ01000015.1:subseq(1987319,98552)	exonerate:protein2genome:local	splice3	48663	48664	.	-	.	intron_id 1 ; splice_site "AG"
JXSJ01000015.1:subseq(1987319,98552)	exonerate:protein2genome:local	cds	48552	48662	.	-	.	
JXSJ01000015.1:subseq(1987319,98552)	exonerate:protein2genome:local	exon	48552	48662	.	-	.	insertions 0 ; deletions 0
JXSJ01000015.1:subseq(1987319,98552)	exonerate:protein2genome:local	similarity	48552	50000	506	-	.	alignment_id 1 ; Query SPP00000644_2.0 ; Align 50001 1 54 ; Align 48927 20 141 ; Align 48663 67 111
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis