Command line: [exonerate -m p2g --showtargetgff -q msrb1a_zf.aa.fa.canviat -t genomemsrb1a_JXSJ01000046.1.fa]
Hostname: [ws101071u]

C4 Alignment:
------------
         Query: SPP00000645_2.0 # Protein # Methionine-R-sufoxide reductase 1a (MSRB1a) # Zebrafish 
        Target: JXSJ01000046.1:subseq(2366260,84740) Miichthys miiuy scaffold46, whole genome shotgun sequence:[revcomp]
         Model: protein2genome:local
     Raw score: 455
   Query range: 0 -> 104
  Target range: 52452 -> 51507

     1 : MetSerPheCysSerPheSerGlyGlyGluIleTyrLysAspHisPheGluSer{G}  > :    19
         ||||||||||||||||||! !|||||||||  !!:!||||||||||||:!!|||{|}   
         MetSerPheCysSerPhePheGlyGlyGluAlaPheLysAspHisPheLysSer{G}++ 
 52452 : ATGTCGTTTTGTAGTTTCTTCGGCGGTGAGGCCTTTAAAGACCACTTCAAATCA{G}gt. : 52395

    20 : >>> Target Intron 1 >>>>  {ly}MetTyrValCysAlaGlnCysGlyTyrGlu :    29
                  502 bp           {||}!!:||||||||||||:!!|||! !:!!:!!
                                 ++{ly}IleTyrValCysAlaLysCysGluHisGln
 52394 : ........................ag{GG}ATTTATGTATGTGCCAAGTGTGAGCACCAG : 51866

    30 : LeuPheSerSerArgSerLysTyrGluHisSerSerProTrpProAlaPheThrGluThr :    49
         ||||||||||||!.!|||||||||||||||||||||||||||||||||||||||||||||
         LeuPheSerSerHisSerLysTyrGluHisSerSerProTrpProAlaPheThrGluThr
 51865 : CTGTTCTCCAGCCACTCCAAGTACGAGCACTCGTCCCCCTGGCCGGCCTTCACAGAGACC : 51806

    50 : IleHisGluAspSerValSerLysGlnGluGluArgTrpGlyAlaTyrLys  >>>> Ta :    67
         |||! !||||||||||||||||||!!.|||||||||   ||||||||||||         
         IleLeuGluAspSerValSerLysHisGluGluArgProGlyAlaTyrLys++       
 51805 : ATCCTTGAGGACAGTGTGTCCAAACATGAGGAGAGACCCGGGGCATATAAGgt....... : 51750

    68 : rget Intron 2 >>>>  ValArgCysGlyLysCysGlyAsnGlyLeuGlyHisGluP :    80
            131 bp           ||||||||||||||||||||||||||||||||||||||||
                           ++ValArgCysGlyLysCysGlyAsnGlyLeuGlyHisGluP
 51749 : ..................agGTGCGGTGTGGGAAATGTGGAAATGGGCTTGGCCATGAAT : 51582

    81 : heValAsnAspGlyProLysHisGlyLeuSerArgPheUnkIlePheSerSerSerLeuL :   100
         |||||||||||||||||    ! |||||||||||||||   |||||||||||||||||||
         heValAsnAspGlyProAlaLysGlyLeuSerArgPhe***IlePheSerSerSerLeuL
 51581 : TTGTGAATGACGGGCCAGCCAAAGGCCTGTCTCGCTTCTGAATATTCAGCAGCTCACTGA : 51522

   101 : ysPheIleProLys :   104
         ||||||||||||||
         ysPheIleProLys
 51521 : AGTTCATCCCTAAA : 51508

vulgar: SPP00000645_2.0 0 104 . JXSJ01000046.1:subseq(2366260,84740) 52452 51507 - 455 M 18 54 S 0 1 5 0 2 I 0 498 3 0 2 S 1 2 M 47 141 5 0 2 I 0 127 3 0 2 M 38 114
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2016-11-22
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
JXSJ01000046.1:subseq(2366260,84740)	exonerate:protein2genome:local	gene	51508	52452	455	-	.	gene_id 1 ; sequence SPP00000645_2.0 ; gene_orientation +
JXSJ01000046.1:subseq(2366260,84740)	exonerate:protein2genome:local	cds	52398	52452	.	-	.	
JXSJ01000046.1:subseq(2366260,84740)	exonerate:protein2genome:local	exon	52398	52452	.	-	.	insertions 0 ; deletions 0
JXSJ01000046.1:subseq(2366260,84740)	exonerate:protein2genome:local	splice5	52396	52397	.	-	.	intron_id 1 ; splice_site "GT"
JXSJ01000046.1:subseq(2366260,84740)	exonerate:protein2genome:local	intron	51896	52397	.	-	.	intron_id 1
JXSJ01000046.1:subseq(2366260,84740)	exonerate:protein2genome:local	splice3	51896	51897	.	-	.	intron_id 0 ; splice_site "AG"
JXSJ01000046.1:subseq(2366260,84740)	exonerate:protein2genome:local	cds	51753	51895	.	-	.	
JXSJ01000046.1:subseq(2366260,84740)	exonerate:protein2genome:local	exon	51753	51895	.	-	.	insertions 0 ; deletions 0
JXSJ01000046.1:subseq(2366260,84740)	exonerate:protein2genome:local	splice5	51751	51752	.	-	.	intron_id 2 ; splice_site "GT"
JXSJ01000046.1:subseq(2366260,84740)	exonerate:protein2genome:local	intron	51622	51752	.	-	.	intron_id 2
JXSJ01000046.1:subseq(2366260,84740)	exonerate:protein2genome:local	splice3	51622	51623	.	-	.	intron_id 1 ; splice_site "AG"
JXSJ01000046.1:subseq(2366260,84740)	exonerate:protein2genome:local	cds	51508	51621	.	-	.	
JXSJ01000046.1:subseq(2366260,84740)	exonerate:protein2genome:local	exon	51508	51621	.	-	.	insertions 0 ; deletions 0
JXSJ01000046.1:subseq(2366260,84740)	exonerate:protein2genome:local	similarity	51508	52452	455	-	.	alignment_id 1 ; Query SPP00000645_2.0 ; Align 52453 1 54 ; Align 51894 20 141 ; Align 51622 67 114
# --- END OF GFF DUMP ---
#