TBLASTN 2.2.30+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: /export/cursos/20428/BI/genomes/2016/Miichthys_miiuy/genome.fa 6,294 sequences; 619,300,777 total letters Query= SPP00000626_2.0 # Protein # Methionine sulfoxide reductase A (MsrA) # Zebrafish Length=232 Score E Sequences producing significant alignments: (Bits) Value JXSJ01000913.1 Miichthys miiuy scaffold913, whole genome shotgu... 93.2 1e-19 JXSJ01000021.1 Miichthys miiuy scaffold21, whole genome shotgun... 80.1 2e-15 JXSJ01003785.1 Miichthys miiuy scaffold3785, whole genome shotg... 58.2 1e-08 JXSJ01003275.1 Miichthys miiuy scaffold3275, whole genome shotg... 42.4 0.003 > JXSJ01000913.1 Miichthys miiuy scaffold913, whole genome shotgun sequence Length=107814 Score = 93.2 bits (230), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 43/57 (75%), Positives = 47/57 (82%), Gaps = 1/57 (2%) Frame = -1 Query 61 EGLQMVLFGMGCFWGAERKFWRQKGVYSTQVGYSGGYTPNPTYEEVCTGKTGHTEVV 117 +G + GMGCFWGAERKFWRQKGVYSTQVGYSGGYT NP+Y EVCTG T HT +V Sbjct 72639 KGCCLFFEGMGCFWGAERKFWRQKGVYSTQVGYSGGYTSNPSYNEVCTGNT-HTHIV 72472 Score = 72.0 bits (175), Expect = 6e-13, Method: Composition-based stats. Identities = 32/45 (71%), Positives = 36/45 (80%), Gaps = 0/45 (0%) Frame = -2 Query 109 GKTGHTEVVRVVFEPQKIKFSELLKVFWESHNPTQGMRQGNDVGT 153 G+TGHTEVVRVVF P+KI F +LLKVFWESHNPTQG D+ T Sbjct 70019 GRTGHTEVVRVVFHPEKISFGKLLKVFWESHNPTQGTASAADIVT 69885 Score = 62.4 bits (150), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 29/53 (55%), Positives = 37/53 (70%), Gaps = 1/53 (2%) Frame = -3 Query 1 MVARTSVRLIWRQFIQSRMGEMSSKVQMISPEEALPGREQSIKVSAKHDVNGN 53 MV+ + +RL+WR F+ SRMG+M+S QM +PE ALPGR IKVS K N N Sbjct 86182 MVSSSRLRLVWRHFMNSRMGDMASTAQMPTPETALPGRPDGIKVSGKR-TNAN 86027 Score = 61.2 bits (147), Expect = 2e-09, Method: Composition-based stats. Identities = 27/39 (69%), Positives = 35/39 (90%), Gaps = 0/39 (0%) Frame = -2 Query 144 GMRQGNDVGTTYRSSIYTNTQEQLEQALQSREEYQKVLT 182 GMRQGNDVGTTYRS++YT T++ L++AL S++EYQKV T Sbjct 69245 GMRQGNDVGTTYRSAVYTYTKQHLDEALASKDEYQKVRT 69129 Score = 53.1 bits (126), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 22/29 (76%), Positives = 26/29 (90%), Gaps = 0/29 (0%) Frame = -2 Query 41 SIKVSAKHDVNGNRTVPPFPEGLQMVLFG 69 S+ +AKHDVNGNRTVPPFPEG +MV+FG Sbjct 73658 SLPRAAKHDVNGNRTVPPFPEGTEMVMFG 73572 > JXSJ01000021.1 Miichthys miiuy scaffold21, whole genome shotgun sequence Length=4019889 Score = 80.1 bits (196), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 32/41 (78%), Positives = 38/41 (93%), Gaps = 0/41 (0%) Frame = +3 Query 69 GMGCFWGAERKFWRQKGVYSTQVGYSGGYTPNPTYEEVCTG 109 GMGCFWGAE+ FWR GV+STQVGY+GG+TPNPTY+EVC+G Sbjct 799506 GMGCFWGAEKHFWRLPGVFSTQVGYAGGFTPNPTYKEVCSG 799628 Score = 79.0 bits (193), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 36/50 (72%), Positives = 40/50 (80%), Gaps = 0/50 (0%) Frame = +1 Query 181 LTEEGFGAITTEITMAKEFYYAEDYHQQYLSKNPDGYCGLGGTGVSCPIG 230 L ++G+ AITTEI +FYYAEDYHQQYL K P GYCGL GTGVSCPIG Sbjct 823315 LDKKGYSAITTEIQEGHQFYYAEDYHQQYLKKVPKGYCGLKGTGVSCPIG 823464 Score = 62.8 bits (151), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 40/125 (32%), Positives = 51/125 (41%), Gaps = 59/125 (47%) Frame = +3 Query 45 SAKHDVNGNRTVPPFPEGLQMVLFG---------------------------------MG 71 + KH VNGN TV PFPEG++ ++FG Sbjct 799257 TDKHAVNGNPTVEPFPEGMETIMFGETVQSHISVIRINPIWNPLLPICGYWPILVN*WAL 799436 Query 72 CFWGAERK-------------------FW-------RQKGVYSTQVGYSGGYTPNPTYEE 105 C W + FW R GV+STQVGY+GG+TPNPTY+E Sbjct 799437 CGWCGRTEALMSCVCVCMVSLCPGMGCFWGAEKHFWRLPGVFSTQVGYAGGFTPNPTYKE 799616 Query 106 VCTGK 110 VC+G Sbjct 799617 VCSGN 799631 Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 25/37 (68%), Positives = 29/37 (78%), Gaps = 0/37 (0%) Frame = +1 Query 108 TGKTGHTEVVRVVFEPQKIKFSELLKVFWESHNPTQG 144 +G TGHTEVVRVVF P+ I ELL FWE+H+PTQG Sbjct 802477 SGLTGHTEVVRVVFSPEDINLEELLNHFWENHDPTQG 802587 Score = 42.4 bits (98), Expect = 0.004, Method: Compositional matrix adjust. Identities = 20/37 (54%), Positives = 26/37 (70%), Gaps = 0/37 (0%) Frame = +2 Query 144 GMRQGNDVGTTYRSSIYTNTQEQLEQALQSREEYQKV 180 GM+Q D GT YRS+IYT+ Q E AL+S+ YQ+V Sbjct 814076 GMKQHADCGTQYRSAIYTSNPAQQELALKSKVAYQQV 814186 > JXSJ01003785.1 Miichthys miiuy scaffold3785, whole genome shotgun sequence Length=2820 Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 40/156 (26%), Positives = 67/156 (43%), Gaps = 7/156 (4%) Frame = -3 Query 63 LQMVLFGMGCFWGAERKFWRQKGVYSTQVGYSGGYTPNPTYEEVCTGKTGHTEVVRVVFE 122 ++ + F GCF G F+R GV + +VGY G Y + + + E+V++ ++ Sbjct 562 IKSIYFVGGCF*GV*EYFFRLNGVVNIEVGYVNGIIDKIKYYSL--KRILYVEIVKIDYD 389 Query 123 PQKIKFSELLKVFWESHNPTQGMRQGNDVGTTYRSSIYTNTQEQLEQALQSREEYQKVLT 182 I F EL+ + + GNDVG YR +Y ++ ++K Sbjct 388 LNIISFEELIVYLFRIIYLDLLNK*GNDVGV*YRIGVYFIDSSDVKIIDLVFNIFKK--- 218 Query 183 EEGFGAITTEITMAKEFYYAEDYHQQYLSKNPDGYC 218 + E+ K + E+Y+ YL KN GYC Sbjct 217 --NYKEFYVELEELKNYLVGEEYY*DYLKKNFIGYC 116 > JXSJ01003275.1 Miichthys miiuy scaffold3275, whole genome shotgun sequence Length=4178 Score = 42.4 bits (98), Expect = 0.003, Method: Compositional matrix adjust. Identities = 20/37 (54%), Positives = 26/37 (70%), Gaps = 0/37 (0%) Frame = -2 Query 144 GMRQGNDVGTTYRSSIYTNTQEQLEQALQSREEYQKV 180 GM+Q D GT YRS+IYT+ Q E AL+S+ YQ+V Sbjct 1219 GMKQHADCGTQYRSAIYTSNPAQQELALKSKVAYQQV 1109 Lambda K H a alpha 0.316 0.133 0.404 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 23655177310 Database: /export/cursos/20428/BI/genomes/2016/Miichthys_miiuy/genome.fa Posted date: Oct 21, 2016 4:44 PM Number of letters in database: 619,300,777 Number of sequences in database: 6,294 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 13 Window for multiple hits: 40