TBLASTN 2.2.30+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.



Database: /export/cursos/20428/BI/genomes/2016/Miichthys_miiuy/genome.fa
           6,294 sequences; 619,300,777 total letters



Query= SPP00000625_2.0 # Protein # Methionine sulfoxide reductase A (MsrA)
# Zebrafish

Length=238
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  JXSJ01000021.1 Miichthys miiuy scaffold21, whole genome shotgun...  84.3    8e-17
  JXSJ01000913.1 Miichthys miiuy scaffold913, whole genome shotgu...  80.9    1e-15
  JXSJ01003785.1 Miichthys miiuy scaffold3785, whole genome shotg...  54.7    2e-07
  JXSJ01003275.1 Miichthys miiuy scaffold3275, whole genome shotg...  50.4    8e-06


> JXSJ01000021.1 Miichthys miiuy scaffold21, whole genome shotgun 
sequence
Length=4019889

 Score = 84.3 bits (207),  Expect = 8e-17, Method: Compositional matrix adjust.
 Identities = 39/56 (70%), Positives = 45/56 (80%), Gaps = 0/56 (0%)
 Frame = +1

Query  183     LSRKGLGEITTDIRQLTVFYYAEDYHQQYLHKVPKGYCGLKGTGVTCSITEGRDEL  238
               L +KG   ITT+I++   FYYAEDYHQQYL KVPKGYCGLKGTGV+C I  G+DEL
Sbjct  823315  LDKKGYSAITTEIQEGHQFYYAEDYHQQYLKKVPKGYCGLKGTGVSCPIGAGKDEL  823482


 Score = 81.6 bits (200),  Expect = 6e-16, Method: Compositional matrix adjust.
 Identities = 35/47 (74%), Positives = 39/47 (83%), Gaps = 0/47 (0%)
 Frame = +3

Query  65      MEMIMFGMGCFWGAERRFWKITGVFSTQVGYAGGFTSNPTYHEVCSG  111
               M  +  GMGCFWGAE+ FW++ GVFSTQVGYAGGFT NPTY EVCSG
Sbjct  799488  MVSLCPGMGCFWGAEKHFWRLPGVFSTQVGYAGGFTPNPTYKEVCSG  799628


 Score = 69.3 bits (168),  Expect = 6e-12, Method: Compositional matrix adjust.
 Identities = 30/37 (81%), Positives = 35/37 (95%), Gaps = 0/37 (0%)
 Frame = +1

Query  110     SGLTGHTEVVRVVFSPKDVSLEKLLKVFWESHDPTQG  146
               SGLTGHTEVVRVVFSP+D++LE+LL  FWE+HDPTQG
Sbjct  802477  SGLTGHTEVVRVVFSPEDINLEELLNHFWENHDPTQG  802587


 Score = 50.4 bits (119),  Expect = 9e-06, Method: Compositional matrix adjust.
 Identities = 24/36 (67%), Positives = 28/36 (78%), Gaps = 0/36 (0%)
 Frame = +2

Query  146     GMAQGNDHGTQYRSAIYTYSPEQQDLAMKSKHMYQE  181
               GM Q  D GTQYRSAIYT +P QQ+LA+KSK  YQ+
Sbjct  814076  GMKQHADCGTQYRSAIYTSNPAQQELALKSKVAYQQ  814183


 Score = 38.9 bits (89),  Expect = 0.046, Method: Compositional matrix adjust.
 Identities = 16/19 (84%), Positives = 17/19 (89%), Gaps = 0/19 (0%)
 Frame = +3

Query  53      NGNTTVEPFPDGMEMIMFG  71
               NGN TVEPFP+GME IMFG
Sbjct  799275  NGNPTVEPFPEGMETIMFG  799331


> JXSJ01000913.1 Miichthys miiuy scaffold913, whole genome shotgun 
sequence
Length=107814

 Score = 80.9 bits (198),  Expect = 1e-15, Method: Compositional matrix adjust.
 Identities = 36/56 (64%), Positives = 46/56 (82%), Gaps = 1/56 (2%)
 Frame = -1

Query  64     GMEMIMFGMGCFWGAERRFWKITGVFSTQVGYAGGFTSNPTYHEVCSGLTGHTEVV  119
              G  +   GMGCFWGAER+FW+  GV+STQVGY+GG+TSNP+Y+EVC+G T HT +V
Sbjct  72636  GCCLFFEGMGCFWGAERKFWRQKGVYSTQVGYSGGYTSNPSYNEVCTGNT-HTHIV  72472


 Score = 66.6 bits (161),  Expect = 3e-11, Method: Composition-based stats.
 Identities = 30/43 (70%), Positives = 34/43 (79%), Gaps = 0/43 (0%)
 Frame = -2

Query  110    SGLTGHTEVVRVVFSPKDVSLEKLLKVFWESHDPTQGMAQGND  152
              +G TGHTEVVRVVF P+ +S  KLLKVFWESH+PTQG A   D
Sbjct  70022  AGRTGHTEVVRVVFHPEKISFGKLLKVFWESHNPTQGTASAAD  69894


 Score = 46.2 bits (108),  Expect = 2e-04, Method: Compositional matrix adjust.
 Identities = 22/48 (46%), Positives = 30/48 (63%), Gaps = 0/48 (0%)
 Frame = -2

Query  146    GMAQGNDHGTQYRSAIYTYSPEQQDLAMKSKHMYQEALSRKGLGEITT  193
              GM QGND GT YRSA+YTY+ +  D A+ SK  YQ+  +   + +  T
Sbjct  69245  GMRQGNDVGTTYRSAVYTYTKQHLDEALASKDEYQKVRTFDSISQYAT  69102


> JXSJ01003785.1 Miichthys miiuy scaffold3785, whole genome shotgun 
sequence
Length=2820

 Score = 54.7 bits (130),  Expect = 2e-07, Method: Compositional matrix adjust.
 Identities = 39/156 (25%), Positives = 69/156 (44%), Gaps = 7/156 (4%)
 Frame = -3

Query  65   MEMIMFGMGCFWGAERRFWKITGVFSTQVGYAGGFTSNPTYHEVCSGLTGHTEVVRVVFS  124
            ++ I F  GCF G    F+++ GV + +VGY  G      Y+ +   L  + E+V++ + 
Sbjct  562  IKSIYFVGGCF*GV*EYFFRLNGVVNIEVGYVNGIIDKIKYYSLKRIL--YVEIVKIDYD  389

Query  125  PKDVSLEKLLKVFWESHDPTQGMAQGNDHGTQYRSAIYTYSPEQQDLAMKSKHMYQEALS  184
               +S E+L+   +           GND G  YR  +Y    +  D+ +         + 
Sbjct  388  LNIISFEELIVYLFRIIYLDLLNK*GNDVGV*YRIGVYF--IDSSDVKIIDLVF---NIF  224

Query  185  RKGLGEITTDIRQLTVFYYAEDYHQQYLHKVPKGYC  220
            +K   E   ++ +L  +   E+Y+  YL K   GYC
Sbjct  223  KKNYKEFYVELEELKNYLVGEEYY*DYLKKNFIGYC  116


> JXSJ01003275.1 Miichthys miiuy scaffold3275, whole genome shotgun 
sequence
Length=4178

 Score = 50.4 bits (119),  Expect = 8e-06, Method: Compositional matrix adjust.
 Identities = 24/36 (67%), Positives = 28/36 (78%), Gaps = 0/36 (0%)
 Frame = -2

Query  146   GMAQGNDHGTQYRSAIYTYSPEQQDLAMKSKHMYQE  181
             GM Q  D GTQYRSAIYT +P QQ+LA+KSK  YQ+
Sbjct  1219  GMKQHADCGTQYRSAIYTSNPAQQELALKSKVAYQQ  1112



Lambda      K        H        a         alpha
   0.319    0.136    0.414    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 24889360474


  Database: /export/cursos/20428/BI/genomes/2016/Miichthys_miiuy/genome.fa
    Posted date:  Oct 21, 2016  4:44 PM
  Number of letters in database: 619,300,777
  Number of sequences in database:  6,294



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 13
Window for multiple hits: 40