Command line: [exonerate -m p2g --showtargetgff -q lrp8_hs.aa.fa.txt -t genomelrp8.2_652.fa]
Hostname: [ws101099u]

C4 Alignment:
------------
         Query: SPP00002936_2.0 # Protein # low density lipoprotein receptor-related protein 8 (LRP8) # Human 
        Target: JXSJ01000652.1:subseq(30800,3000) Miichthys miiuy scaffold652, whole genome shotgun sequence
         Model: protein2genome:local
     Raw score: 445
   Query range: 83 -> 264
  Target range: 573 -> 2020

   84 : LysThrCysAlaAspSerAspPheThrCysAspAsnGlyHisCysIleHisGluArgTrpLy :  104
        |||  !|||.!!  !!!!!!:|||  !|||..!!:!|||!!.|||:!:   ...  !!::  
        LysGlnCysThrThrThrGluPheArgCysSerSerGlyGlnCysValSerSerSerPheVa
  574 : AAGCAGTGCACAACCACAGAGTTTCGCTGCAGCAGCGGCCAGTGCGTGTCGTCCTCCTTCGT :  634

  105 : sCysAspGlyGluGluGluCysProAspGlySerAspGluSerGluAlaThrCysThrLysG :  125
        !||||||! !|||! !!!:|||  !||||||||||||      ||||||:!!||| !!    
        lCysAspAspGluAlaAspCysAspAspGlySerAsp------GluAlaSerCysProProV
  635 : GTGCGATGACGAGGCGGACTGTGACGACGGCAGCGAC------GAGGCCTCCTGCCCGCCTG :  691

  126 : lnValCysProAlaGluLysLeuSerCysGlyProThrSerHisLysCysValProAlaSer :  145
          ..!||| !!:!!  !...!!!..!|||..!  !|||         |||||||||  !  !
        alThrCysThrSerThrSerPheGlnCysAsnAsnThr------ValCysValProArgLeu
  692 : TCACTTGCACCTCCACGTCCTTCCAGTGCAACAACACC------GTTTGCGTTCCGCGCCTG :  745

  146 : TrpArgCysAspGlyGluLysAspCysGluGlyGlyAlaAspGluAlaGlyCysAlaThr{T :  166
        |||  !||||||||||||!..||||||   ! !|||:!!||||||  !  !     !  !{ 
        TrpValCysAspGlyGluSerAspCysThrAspGlySerAspGluTrpProGlnAsnCys{G
  746 : TGGGTTTGCGACGGCGAAAGCGACTGCACCGACGGCTCGGATGAGTGGCCCCAGAACTGC{G :  808

  167 : }  >>>> Target Intron 1 >>>>  {rp}LeuAsnGluCysLeuHisAsnAsnGlyG :  176
        }            687 bp           {! }! !||||||||||||:!!!:!|||||||
        }++                         ++{ly}SerAsnGluCysLeuTyrSerAsnGlyG
  809 : }gt.........................ag{GC}TCCAATGAATGCCTGTACAGCAACGGTG : 1525

  177 : lyCysSerHisIleCysThrAspLeuLysIleGlyPheGluCysThrCysProAlaGlyPhe :  196
        |||||||||||||||||!.!|||||||||||||||!:!||||||  !||||||.!!|||!:!
        lyCysSerHisIleCysAsnAspLeuLysIleGlyTyrGluCysLeuCysProThrGlyTyr
 1526 : GTTGCTCTCACATTTGCAATGACCTGAAGATCGGCTATGAGTGCCTATGCCCCACTGGATAT : 1585

  197 : GlnLeuLeuAspGlnLysThrCysGly{A}  >>>> Target Intron 2 >>>>  {sp :  206
        !::|||:!!|||:!!|||  !|||! !{|}            229 bp           {||
        ArgLeuValAspLysLysArgCysGlu{A}++                         ++{sp
 1586 : CGCCTGGTTGACAAAAAACGCTGCGAA{G}gt.........................ag{AT : 1845

  207 : }IleAspGluCysLysAspProAspAlaCysSerGlnIleCysValAsnTyrLysGlyTyrP :  227
        }||||||||||||   |||||||||.!!|||||||||||||||:!!||| ! !  |||  !!
        }IleAspGluCysAlaAspProAspThrCysSerGlnIleCysIleAsnGlnIleGlySerT
 1846 : }ATCGATGAGTGTGCTGACCCGGACACCTGCAGCCAAATCTGCATCAACCAGATCGGCAGCT : 1907

  228 : heLysCysGluCysTyrProGlyTyrGluMetAspLeuLeuThrLysAsnCysLysAlaAla :  247
        :!||||||:!!||| !   !||||||:!!:!:|||! !  !||||||  !|||||||||  !
        yrLysCysGlnCysGluGluGlyTyrGlnValAspProAlaThrLysAlaCysLysAlaIle
 1908 : ACAAATGCCAGTGCGAGGAGGGTTACCAAGTTGACCCAGCAACCAAAGCCTGCAAGGCCATC : 1967

  248 : AlaGlyLysSerProSerLeuIlePheThrAsnArgHisGluValArgArg :  264
        !.!  ! !!..!!     |||   |||......:::...:::   |||:::
        GlyLys***GlnLeuTyrLeuSerPheValGlnLysArgLysSerArgGln
 1968 : GGTAAATAGCAGCtctatttgtcttttgttcagaaaaggaaaagcagacaa : 2020

vulgar: SPP00002936_2.0 83 264 . JXSJ01000652.1:subseq(30800,3000) 573 2020 + 445 M 33 99 G 2 0 M 19 57 G 2 0 M 26 78 S 0 1 5 0 2 I 0 683 3 0 2 S 1 2 M 39 117 S 0 1 5 0 2 I 0 225 3 0 2 S 1 2 M 58 174
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2016-12-02
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
JXSJ01000652.1:subseq(30800,3000)	exonerate:protein2genome:local	gene	574	2020	445	+	.	gene_id 1 ; sequence SPP00002936_2.0 ; gene_orientation +
JXSJ01000652.1:subseq(30800,3000)	exonerate:protein2genome:local	cds	574	808	.	+	.	
JXSJ01000652.1:subseq(30800,3000)	exonerate:protein2genome:local	exon	574	808	.	+	.	insertions 0 ; deletions 4
JXSJ01000652.1:subseq(30800,3000)	exonerate:protein2genome:local	splice5	809	810	.	+	.	intron_id 1 ; splice_site "GT"
JXSJ01000652.1:subseq(30800,3000)	exonerate:protein2genome:local	intron	809	1495	.	+	.	intron_id 1
JXSJ01000652.1:subseq(30800,3000)	exonerate:protein2genome:local	splice3	1494	1495	.	+	.	intron_id 0 ; splice_site "AG"
JXSJ01000652.1:subseq(30800,3000)	exonerate:protein2genome:local	cds	1496	1615	.	+	.	
JXSJ01000652.1:subseq(30800,3000)	exonerate:protein2genome:local	exon	1496	1615	.	+	.	insertions 0 ; deletions 0
JXSJ01000652.1:subseq(30800,3000)	exonerate:protein2genome:local	splice5	1616	1617	.	+	.	intron_id 2 ; splice_site "GT"
JXSJ01000652.1:subseq(30800,3000)	exonerate:protein2genome:local	intron	1616	1844	.	+	.	intron_id 2
JXSJ01000652.1:subseq(30800,3000)	exonerate:protein2genome:local	splice3	1843	1844	.	+	.	intron_id 1 ; splice_site "AG"
JXSJ01000652.1:subseq(30800,3000)	exonerate:protein2genome:local	cds	1845	2020	.	+	.	
JXSJ01000652.1:subseq(30800,3000)	exonerate:protein2genome:local	exon	1845	2020	.	+	.	insertions 0 ; deletions 0
JXSJ01000652.1:subseq(30800,3000)	exonerate:protein2genome:local	similarity	574	2020	445	+	.	alignment_id 1 ; Query SPP00002936_2.0 ; Align 574 84 99 ; Align 673 119 57 ; Align 730 140 78 ; Align 1498 167 117 ; Align 1847 207 174
# --- END OF GFF DUMP ---