Command line: [exonerate -m p2g --showtargetgff -q gpx8_zf.aa.fa.canviat -t genomegpx8_JXSJ01000013.1.fa]
Hostname: [ws116074U]

C4 Alignment:
------------
         Query: SPP00000620_2.0 # Protein # Glutathione peroxidase 8 (GPx8) # Zebrafish 
        Target: JXSJ01000013.1:subseq(1251222,101526) Miichthys miiuy scaffold13, whole genome shotgun sequence:[revcomp]
         Model: protein2genome:local
     Raw score: 591
   Query range: 0 -> 153
  Target range: 51526 -> 49999

     1 : ArgLysThrLysAspPheTyrSerTyrGluValLysAspAlaArgGlyArgThrValSer :    20
         |||||| !!  !||||||||||||!:!|||||||||||||||!:!|||||||||||||||
         ArgLysProAlaAspPheTyrSerPheGluValLysAspAlaLysGlyArgThrValSer
 51526 : AGAAAACCTGCGGATTTTTACTCCTTCGAGGTCAAAGACGCGAAGGGGAGGACGGTGTCT : 51469

    21 : LeuGluLysTyrArgGlyLys  >>>> Target Intron 1 >>>>  ValSerLeuV :    31
         |||||||||||||||||||||            154 bp           !.!|||||||
         LeuGluLysTyrArgGlyLys++                         ++AlaSerLeuV
 51468 : CTGGAGAAGTACCGAGGAAAAgt.........................agGCGTCTTTGG : 51282

    32 : alValAsnValAlaSerGlySerGluLeuThrGluGlnSerTyrArgAlaLeuGlnGluL :    51
         |||||||||||||||||  !!!!|||! !||||||  !!:!||||||:!!:!!|||||||
         alValAsnValAlaSerHisCysGluGlnThrGluAlaAsnTyrArgSerMetGlnGluL
 51281 : TTGTAAACGTGGCGAGTCACTGCGAGCAGACTGAGGCGAACTACAGGTCAATGCAGGAGC : 51222

    52 : euHisArgGluLeuGlyThrSerHisPheAsnValLeuAlaPheProCysSerGlnTyrG :    71
         ||||||||||||||||||||||||||||||||||||||||||||||||||.!!|||!:!|
         euHisArgGluLeuGlyThrSerHisPheAsnValLeuAlaPheProCysGlyGlnPheG
 51221 : TCCACCGAGAGCTGGGCACCTCTCACTTCAACGTCCTGGCCTTTCCCTGCGGTCAGTTCG : 51162

    72 : lyAspThrGluSerGlyThrSerArgGluIleGluAlaPheAlaLysSerAsnTyrGlyV :    91
         |||||||||||!!!||||||||||||!!:|||||||||||||||||||||!.!|||||||
         lyAspThrGluThrGlyThrSerArgAspIleGluAlaPheAlaLysSerThrTyrGlyV
 51161 : GAGACACAGAGACCGGGACCAGCCGGGACATCGAGGCTTTCGCCAAGTCCACCTATGGCG : 51102

    92 : alThrPheProIlePheAsnLysIleLysIleMetGlySerGluAlaGluProAlaPheA :   111
         |||||||||||.!!|||!:!!:!||||||||||||||||||||||||!!:||||||||||
         alThrPheProPhePheSerArgIleLysIleMetGlySerGluAlaAspProAlaPheA
 51101 : TCACCTTCCCCTTCTTCAGCAGGATCAAAATAATGGGCTCAGAGGCTGACCCTGCCTTCA : 51042

   112 : rgPheLeuThr{G}  >>>> Target Intron 2 >>>>  {ly}ArgLysTrpAsnP :   120
         |||||||||||{!}            914 bp           { !}! !||||||||||
         rgPheLeuThr{V}++                         +-{al}ProLysTrpAsnP
 51041 : GATTCCTCACA{G}gt.........................aa{TC}CCAAAGTGGAACT : 50101

   121 : heTrpLysPheLeuValSerProGluGlyGlnValValArgPheTrpLysProGluGluP :   140
         |||||||||||||||||!:!|||||||||:!!|||||||||||||||::! !!!!:||||
         heTrpLysPheLeuValAsnProGluGlyLysValValArgPheTrpArgThrAspGluP
 50100 : TCTGGAAGTTTCTGGTGAATCCAGAGGGTAAAGTGGTCCGGTTCTGGCGAACGGACGAGC : 50041

   141 : roValSerAspIleArgLysGluAlaThrThrLeuValArg :   153
         ||:!!..!..!:!!|||:!!|||!.!|||.!!:!!||||||
         roMetGluSerValArgGlnGluValThrAlaMetValArg
 50040 : CCATGGAGAGCGTTCGACAAGAGGTCACAGCGATGGTGCGA : 50000

vulgar: SPP00000620_2.0 0 153 . JXSJ01000013.1:subseq(1251222,101526) 51526 49999 - 591 M 27 81 5 0 2 I 0 150 3 0 2 M 87 261 S 0 1 5 0 2 I 0 910 3 0 2 S 1 2 M 38 114
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2016-11-17
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
JXSJ01000013.1:subseq(1251222,101526)	exonerate:protein2genome:local	gene	50000	51526	591	-	.	gene_id 1 ; sequence SPP00000620_2.0 ; gene_orientation +
JXSJ01000013.1:subseq(1251222,101526)	exonerate:protein2genome:local	cds	51446	51526	.	-	.	
JXSJ01000013.1:subseq(1251222,101526)	exonerate:protein2genome:local	exon	51446	51526	.	-	.	insertions 0 ; deletions 0
JXSJ01000013.1:subseq(1251222,101526)	exonerate:protein2genome:local	splice5	51444	51445	.	-	.	intron_id 1 ; splice_site "GT"
JXSJ01000013.1:subseq(1251222,101526)	exonerate:protein2genome:local	intron	51292	51445	.	-	.	intron_id 1
JXSJ01000013.1:subseq(1251222,101526)	exonerate:protein2genome:local	splice3	51292	51293	.	-	.	intron_id 0 ; splice_site "AG"
JXSJ01000013.1:subseq(1251222,101526)	exonerate:protein2genome:local	cds	51030	51291	.	-	.	
JXSJ01000013.1:subseq(1251222,101526)	exonerate:protein2genome:local	exon	51030	51291	.	-	.	insertions 0 ; deletions 0
JXSJ01000013.1:subseq(1251222,101526)	exonerate:protein2genome:local	splice5	51028	51029	.	-	.	intron_id 2 ; splice_site "GT"
JXSJ01000013.1:subseq(1251222,101526)	exonerate:protein2genome:local	intron	50116	51029	.	-	.	intron_id 2
JXSJ01000013.1:subseq(1251222,101526)	exonerate:protein2genome:local	splice3	50116	50117	.	-	.	intron_id 1 ; splice_site "AA"
JXSJ01000013.1:subseq(1251222,101526)	exonerate:protein2genome:local	cds	50000	50115	.	-	.	
JXSJ01000013.1:subseq(1251222,101526)	exonerate:protein2genome:local	exon	50000	50115	.	-	.	insertions 0 ; deletions 0
JXSJ01000013.1:subseq(1251222,101526)	exonerate:protein2genome:local	similarity	50000	51526	591	-	.	alignment_id 1 ; Query SPP00000620_2.0 ; Align 51527 1 81 ; Align 51292 28 261 ; Align 50114 116 114
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis