TBLASTN 2.2.30+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: /export/cursos/20428/BI/genomes/2016/Miichthys_miiuy/genome.fa 6,294 sequences; 619,300,777 total letters Query= SPP00000620_2.0 # Protein # Glutathione peroxidase 8 (GPx8) # Zebrafish Length=153 Score E Sequences producing significant alignments: (Bits) Value JXSJ01000013.1 Miichthys miiuy scaffold13, whole genome shotgun... 155 1e-41 JXSJ01000525.1 Miichthys miiuy scaffold525, whole genome shotgu... 103 4e-24 JXSJ01002762.1 Miichthys miiuy scaffold2762, whole genome shotg... 100 5e-23 JXSJ01000043.1 Miichthys miiuy scaffold43, whole genome shotgun... 45.4 7e-05 JXSJ01000122.1 Miichthys miiuy scaffold122, whole genome shotgu... 43.5 3e-04 JXSJ01000061.1 Miichthys miiuy scaffold61, whole genome shotgun... 41.2 0.002 JXSJ01000006.1 Miichthys miiuy scaffold6, whole genome shotgun ... 39.7 0.007 JXSJ01000010.1 Miichthys miiuy scaffold10, whole genome shotgun... 38.5 0.017 JXSJ01000009.1 Miichthys miiuy scaffold9, whole genome shotgun ... 38.5 0.017 JXSJ01000014.1 Miichthys miiuy scaffold14, whole genome shotgun... 36.6 0.090 > JXSJ01000013.1 Miichthys miiuy scaffold13, whole genome shotgun sequence Length=5370402 Score = 155 bits (391), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 71/91 (78%), Positives = 81/91 (89%), Gaps = 0/91 (0%) Frame = -1 Query 25 RGKVSLVVNVASGSELTEQSYRALQELHRELGTSHFNVLAFPCSQYGDTESGTSREIEAF 84 + SLVVNVAS E TE +YR++QELHRELGTSHFNVLAFPC Q+GDTE+GTSR+IEAF Sbjct 1302522 HAQASLVVNVASHCEQTEANYRSMQELHRELGTSHFNVLAFPCGQFGDTETGTSRDIEAF 1302343 Query 85 AKSNYGVTFPIFNKIKIMGSEAEPAFRFLTG 115 AKS YGVTFP F++IKIMGSEA+PAFRFLTG Sbjct 1302342 AKSTYGVTFPFFSRIKIMGSEADPAFRFLTG 1302250 Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 24/37 (65%), Positives = 32/37 (86%), Gaps = 0/37 (0%) Frame = -3 Query 117 KWNFWKFLVSPEGQVVRFWKPEEPVSDIRKEATTLVR 153 KWNFWKFLV+PEG+VVRFW+ +EP+ +R+E T +VR Sbjct 1301332 KWNFWKFLVNPEGKVVRFWRTDEPMESVRQEVTAMVR 1301222 Score = 54.7 bits (130), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 25/29 (86%), Positives = 27/29 (93%), Gaps = 0/29 (0%) Frame = -3 Query 1 RKTKDFYSYEVKDARGRTVSLEKYRGKVS 29 RK DFYS+EVKDA+GRTVSLEKYRGKVS Sbjct 1302748 RKPADFYSFEVKDAKGRTVSLEKYRGKVS 1302662 > JXSJ01000525.1 Miichthys miiuy scaffold525, whole genome shotgun sequence Length=204830 Score = 103 bits (258), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 47/100 (47%), Positives = 69/100 (69%), Gaps = 5/100 (5%) Frame = +2 Query 21 LEKYRGK-----VSLVVNVASGSELTEQSYRALQELHRELGTSHFNVLAFPCSQYGDTES 75 L+ Y G VSLVVNVAS TE+ Y+ +Q+L R+ G HFNVLAFPC+Q+G E Sbjct 179912 LQCYHGVFLWL*VSLVVNVASECGFTEEHYKEMQQLQRDFGPYHFNVLAFPCNQFGQQEP 180091 Query 76 GTSREIEAFAKSNYGVTFPIFNKIKIMGSEAEPAFRFLTG 115 G+ +EI++F + YGV+FP+F+KI ++G+ A +++L G Sbjct 180092 GSDKEIDSFVRRVYGVSFPLFSKIAVVGTGANNVYKYLVG 180211 Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 21/32 (66%), Positives = 27/32 (84%), Gaps = 0/32 (0%) Frame = +3 Query 2 KTKDFYSYEVKDARGRTVSLEKYRGKVSLVVN 33 K KDFY+++V ++RG+ VSLEKYRG VSL VN Sbjct 178077 KQKDFYTFKVVNSRGKLVSLEKYRGSVSLCVN 178172 Score = 38.5 bits (88), Expect = 0.018, Method: Compositional matrix adjust. Identities = 16/36 (44%), Positives = 23/36 (64%), Gaps = 0/36 (0%) Frame = +1 Query 118 WNFWKFLVSPEGQVVRFWKPEEPVSDIRKEATTLVR 153 WNFWK+L+ G+VV W P+ V +IR + +VR Sbjct 180943 WNFWKYLIDVNGKVVDAWGPKVSVKEIRPKIAEMVR 181050 > JXSJ01002762.1 Miichthys miiuy scaffold2762, whole genome shotgun sequence Length=6586 Score = 100 bits (249), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 60/170 (35%), Positives = 85/170 (50%), Gaps = 28/170 (16%) Frame = -1 Query 3 TKDFYSYEVKDARGRTVSLEKYRGKVSLVVNVASGSELTEQSYRALQELHRELGTSHFNV 62 T+ Y +K G + +L ++GKV LVVNVAS LT Q Y L++L+ E + V Sbjct 4507 TQTIYDIPLKTIEGSSQTLADFQGKVLLVVNVASKCGLTPQ-YAGLEKLYEEHREAGLEV 4331 Query 63 LAFPCSQYGDTESGTSREIEAFAKSNYGVTFPIFNKIKIMGSEAEPAFRFLTGRK----- 117 L FP + + + E G+ EI+AF NY V FP+F+KI + G++ P +R LT + Sbjct 4330 LGFPANDFREQEPGSDEEIKAFCSLNYAVQFPLFSKIAVTGADRHPLYRLLTEAQPQTTG 4151 Query 118 ----------------------WNFWKFLVSPEGQVVRFWKPEEPVSDIR 145 WNF KFLVS +GQVV + P+ D R Sbjct 4150 EGPMRERLKGYGIEPGPLPEVLWNFEKFLVSRDGQVVARFAPDVAADDPR 4001 > JXSJ01000043.1 Miichthys miiuy scaffold43, whole genome shotgun sequence Length=2573463 Score = 45.4 bits (106), Expect = 7e-05, Method: Composition-based stats. Identities = 24/68 (35%), Positives = 31/68 (46%), Gaps = 0/68 (0%) Frame = -3 Query 4 KDFYSYEVKDARGRTVSLEKYRGKVSLVVNVASGSELTEQSYRALQELHRELGTSHFNVL 63 K FY K G S +GKV L+ NVAS T + Y + ELH +L Sbjct 1231879 KRFYGLTAKLLSGELFSFSALKGKVVLIENVASL*GTTTRDYTQMNELHSRYAAKGLVIL 1231700 Query 64 AFPCSQYG 71 PC+Q+G Sbjct 1231699 GVPCNQFG 1231676 > JXSJ01000122.1 Miichthys miiuy scaffold122, whole genome shotgun sequence Length=783778 Score = 43.5 bits (101), Expect = 3e-04, Method: Composition-based stats. Identities = 22/71 (31%), Positives = 32/71 (45%), Gaps = 0/71 (0%) Frame = -2 Query 1 RKTKDFYSYEVKDARGRTVSLEKYRGKVSLVVNVASGSELTEQSYRALQELHRELGTSHF 60 R FY + G + +GKV L+ NVAS T + Y + ELH + Sbjct 470586 RMATTFYDLKANLLTGEAFNFSSLQGKVVLIENVASL*GTTTRDYTQMNELHDRYASKGL 470407 Query 61 NVLAFPCSQYG 71 +L PC+Q+G Sbjct 470406 VILGVPCNQFG 470374 > JXSJ01000061.1 Miichthys miiuy scaffold61, whole genome shotgun sequence Length=1726861 Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust. Identities = 23/68 (34%), Positives = 33/68 (49%), Gaps = 1/68 (1%) Frame = +3 Query 4 KDFYSYEVKDARGRTVSLEKYRGKVSLVVNVASGSELTEQSYRALQELHRELGTSHFNVL 63 K FY G +V +RG+V L+ NVAS T + + L +L + VL Sbjct 670971 KTFYDLRATTLEGDSVDFNVFRGRVVLIENVASL*GTTTRDFSELNQLQSKY-PHRLVVL 671147 Query 64 AFPCSQYG 71 FPC+Q+G Sbjct 671148 GFPCNQFG 671171 Score = 36.6 bits (83), Expect = 0.078, Method: Composition-based stats. Identities = 23/89 (26%), Positives = 33/89 (37%), Gaps = 28/89 (31%) Frame = +3 Query 93 FPIFNKIKIMGSEAEPAFRFL----------------------------TGRKWNFWKFL 124 F IF K + G+ P F +L T WNF KF+ Sbjct 671769 FTIFEKCDVNGTNTHPVFAYLKDKLPYPDDDPSSLMQDPKFLIWSPINRTDVSWNFEKFI 671948 Query 125 VSPEGQVVRFWKPEEPVSDIRKEATTLVR 153 V PEG+ + + + P DI + L+R Sbjct 671949 VGPEGEPFKRYSKKFPTIDIEPDIQRLLR 672035 > JXSJ01000006.1 Miichthys miiuy scaffold6, whole genome shotgun sequence Length=7996890 Score = 39.7 bits (91), Expect = 0.007, Method: Compositional matrix adjust. Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 0/47 (0%) Frame = -3 Query 25 RGKVSLVVNVASGSELTEQSYRALQELHRELGTSHFNVLAFPCSQYG 71 RG V ++VNVAS T +Y L +H +L FPC+Q+G Sbjct 3978784 RGDVCIIVNVASK*GKTRVNYTQLAGMHASYAEKGLRILGFPCNQFG 3978644 > JXSJ01000010.1 Miichthys miiuy scaffold10, whole genome shotgun sequence Length=6703581 Score = 38.5 bits (88), Expect = 0.017, Method: Composition-based stats. Identities = 15/31 (48%), Positives = 21/31 (68%), Gaps = 0/31 (0%) Frame = +3 Query 117 KWNFWKFLVSPEGQVVRFWKPEEPVSDIRKE 147 KWNF KFLV P+G+ V W P +S++R + Sbjct 2820975 KWNFEKFLVGPDGKPVMRWHPSVNISEVRSD 2821067 > JXSJ01000009.1 Miichthys miiuy scaffold9, whole genome shotgun sequence Length=6752331 Score = 38.5 bits (88), Expect = 0.017, Method: Compositional matrix adjust. Identities = 30/106 (28%), Positives = 39/106 (37%), Gaps = 38/106 (36%) Frame = -1 Query 4 KDFYSYEVKDARGRTVSLEKYRGKVSLVVNVAS--GSELTE----------QS------- 44 K Y + + G+ V L YRGKV L++NVA+ GS + E QS Sbjct 4884183 KSIYDFSAETLDGQLVPLSNYRGKVLLIINVATF*GSTIEEVIFCKSSD*LQSFHIIS*H 4884004 Query 45 -------------------YRALQELHRELGTSHFNVLAFPCSQYG 71 Y L L G F VL F C+Q+G Sbjct 4884003 IICAVIFMKGI*FCVPFPQYHRLNALMEMFGDIRFTVLGFSCNQFG 4883866 Score = 38.1 bits (87), Expect = 0.021, Method: Compositional matrix adjust. Identities = 31/112 (28%), Positives = 40/112 (36%), Gaps = 38/112 (34%) Frame = -1 Query 3 TKDFYSYEVKDARGRTVSLEKYRGKVSLVVNVAS--GSELTE----------QS------ 44 K Y + + G+ V L YRGKV L++NVA+ GS + E QS Sbjct 4884186 NKSIYDFSAETLDGQLVPLSNYRGKVLLIINVATF*GSTIEEVIFCKSSD*LQSFHIIS* 4884007 Query 45 --------------------YRALQELHRELGTSHFNVLAFPCSQYGDTESG 76 Y L L G F VL F C+Q+G G Sbjct 4884006 HIICAVIFMKGI*FCVPFPQYHRLNALMEMFGDIRFTVLGFSCNQFGLQSPG 4883851 > JXSJ01000014.1 Miichthys miiuy scaffold14, whole genome shotgun sequence Length=5141783 Score = 36.6 bits (83), Expect = 0.090, Method: Compositional matrix adjust. Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 0/54 (0%) Frame = -1 Query 24 YRGKVSLVVNVASGSELTEQSYRALQELHRELGTSHFNVLAFPCSQYGDTESGT 77 +RG V ++ NVAS T +Y +LH +LAFP +Q+G+ T Sbjct 8327 FRGSVVIITNVASK*GKTLVNYSQFADLHARYAERGLRILAFPSNQFGNQVCNT 8166 Lambda K H a alpha 0.317 0.133 0.392 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 8846873836 Database: /export/cursos/20428/BI/genomes/2016/Miichthys_miiuy/genome.fa Posted date: Oct 21, 2016 4:44 PM Number of letters in database: 619,300,777 Number of sequences in database: 6,294 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 13 Window for multiple hits: 40