TBLASTN 2.2.30+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: /export/cursos/20428/BI/genomes/2016/Miichthys_miiuy/genome.fa 6,294 sequences; 619,300,777 total letters Query= SPP00000038_2.0 # Protein # Glutathione peroxidase 6 (GPx6) # Human Length=221 Score E Sequences producing significant alignments: (Bits) Value JXSJ01005752.1 Miichthys miiuy scaffold5752, whole genome shotg... 103 1e-24 JXSJ01000122.1 Miichthys miiuy scaffold122, whole genome shotgu... 103 3e-23 JXSJ01000010.1 Miichthys miiuy scaffold10, whole genome shotgun... 91.7 3e-19 JXSJ01000043.1 Miichthys miiuy scaffold43, whole genome shotgun... 91.3 4e-19 JXSJ01000061.1 Miichthys miiuy scaffold61, whole genome shotgun... 90.5 8e-19 JXSJ01002762.1 Miichthys miiuy scaffold2762, whole genome shotg... 87.0 9e-18 JXSJ01000009.1 Miichthys miiuy scaffold9, whole genome shotgun ... 51.2 1e-14 JXSJ01000525.1 Miichthys miiuy scaffold525, whole genome shotgu... 55.8 9e-08 JXSJ01000013.1 Miichthys miiuy scaffold13, whole genome shotgun... 44.7 5e-04 JXSJ01000239.1 Miichthys miiuy scaffold239, whole genome shotgu... 38.9 0.036 > JXSJ01005752.1 Miichthys miiuy scaffold5752, whole genome shotgun sequence Length=1069 Score = 103 bits (257), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 53/117 (45%), Positives = 69/117 (59%), Gaps = 4/117 (3%) Frame = +1 Query 107 QEPGTNSEILLGLKYVCPGSGFVPSFQLFEKGDVNGEKEQKVFTFLKNSCPPTSD----L 162 QE N EILL LKYV PG+GF P FQL EK DVNG+ +F FL+ S P SD Sbjct 103 QENCKNEEILLSLKYVRPGNGFEPKFQLLEKVDVNGKDAHSLFVFLRESLPSPSDEPCAF 282 Query 163 LGSSSQLFWEPMKVHDIRWNFEKFLVGPDGVPVMHWFHQAPVSTVKSDILEYLKQFN 219 + + W P+ +D+ WNFEKFL+GPDGVP + + + ++ DI + L Q N Sbjct 283 ITDPKLVIWSPVCRNDVAWNFEKFLIGPDGVPFKRYSRKFLTNDIEGDIKKLLNQAN 453 > JXSJ01000122.1 Miichthys miiuy scaffold122, whole genome shotgun sequence Length=783778 Score = 103 bits (257), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 53/117 (45%), Positives = 69/117 (59%), Gaps = 4/117 (3%) Frame = -2 Query 107 QEPGTNSEILLGLKYVCPGSGFVPSFQLFEKGDVNGEKEQKVFTFLKNSCPPTSD----L 162 QE N EILL LKYV PG+GF P FQL EK DVNG+ +F FL+ S P SD Sbjct 469341 QENCKNEEILLSLKYVRPGNGFEPKFQLLEKVDVNGKDAHSLFVFLRESLPSPSDEPCAF 469162 Query 163 LGSSSQLFWEPMKVHDIRWNFEKFLVGPDGVPVMHWFHQAPVSTVKSDILEYLKQFN 219 + + W P+ +D+ WNFEKFL+GPDGVP + + + ++ DI + L Q N Sbjct 469161 ITDPKLVIWSPVCRNDVAWNFEKFLIGPDGVPFKRYSRKFLTNDIEGDIKKLLNQAN 468991 Score = 48.5 bits (114), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 27/70 (39%), Positives = 38/70 (54%), Gaps = 2/70 (3%) Frame = -2 Query 39 TIYEYGALTLNGEEYIQFKQFAGKHVLFVNVAAYXGLAAQ-YPELNALQEELKNFGVIVL 97 T Y+ A L GE + F GK VL NVA+ G + Y ++N L + + G+++L Sbjct 470574 TFYDLKANLLTGEAF-NFSSLQGKVVLIENVASL*GTTTRDYTQMNELHDRYASKGLVIL 470398 Query 98 AFPCNQFGKQ 107 PCNQFG Q Sbjct 470397 GVPCNQFGHQ 470368 > JXSJ01000010.1 Miichthys miiuy scaffold10, whole genome shotgun sequence Length=6703581 Score = 91.7 bits (226), Expect = 3e-19, Method: Composition-based stats. Identities = 40/76 (53%), Positives = 55/76 (72%), Gaps = 1/76 (1%) Frame = +3 Query 146 QKVFTFLKNSCPPTSDLLGS-SSQLFWEPMKVHDIRWNFEKFLVGPDGVPVMHWFHQAPV 204 + VF+ +NSCPP D G+ +++LFW+P+K+ DI+WNFEKFLVGPDG PVM W + Sbjct 2820870 RSVFSATQNSCPPVGDNFGNPTNRLFWQPLKMSDIKWNFEKFLVGPDGKPVMRWHPSVNI 2821049 Query 205 STVKSDILEYLKQFNT 220 S V+SDI +YL + T Sbjct 2821050 SEVRSDIRKYLLKLYT 2821097 Score = 53.9 bits (128), Expect(2) = 6e-15, Method: Composition-based stats. Identities = 27/57 (47%), Positives = 31/57 (54%), Gaps = 4/57 (7%) Frame = +1 Query 23 LKPQNRKVDCNKGVTGTIYEYGALTLNGEEYIQFKQFAGKHVLFVNVAAYXGLAAQY 79 L PQ C GTIY+Y A TLNG + F + G+ VLFVNVA Y G QY Sbjct 2819467 LYPQQ----CESATDGTIYQYSAKTLNGSRTVNFSDYTGESVLFVNVATY*GYTFQY 2819625 Score = 47.8 bits (112), Expect(2) = 6e-15, Method: Compositional matrix adjust. Identities = 21/32 (66%), Positives = 24/32 (75%), Gaps = 0/32 (0%) Frame = +3 Query 89 LKNFGVIVLAFPCNQFGKQEPGTNSEILLGLK 120 +K G+ +L FPCNQFGKQEPG EIL GLK Sbjct 2819745 MKPLGLTILGFPCNQFGKQEPGQKHEILPGLK 2819840 Score = 56.2 bits (134), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 26/43 (60%), Positives = 35/43 (81%), Gaps = 0/43 (0%) Frame = +1 Query 113 SEILLGLKYVCPGSGFVPSFQLFEKGDVNGEKEQKVFTFLKNS 155 + + L ++V PG+GFVP+F LF+KGDVNG+ EQ+VFTFLK S Sbjct 2820364 AALFLDSRHVRPGNGFVPNFLLFDKGDVNGKDEQEVFTFLKVS 2820492 > JXSJ01000043.1 Miichthys miiuy scaffold43, whole genome shotgun sequence Length=2573463 Score = 91.3 bits (225), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 49/116 (42%), Positives = 66/116 (57%), Gaps = 4/116 (3%) Frame = -2 Query 107 QEPGTNSEILLGLKYVCPGSGFVPSFQLFEKGDVNGEKEQKVFTFLKNSCP-PTSD---L 162 QE N EIL LKYV PG+GF P F++ EK +VNG+ +F FLK+ P+ D L Sbjct 1231226 QENSKNEEILNSLKYVRPGNGFEPKFKILEKVNVNGKDAHPLFVFLKDKLRFPSDDAMAL 1231047 Query 163 LGSSSQLFWEPMKVHDIRWNFEKFLVGPDGVPVMHWFHQAPVSTVKSDILEYLKQF 218 + + W P+ +DI WNFEKFLVGPDG P + ++ DI E L++ Sbjct 1231046 MNDPQCIIWSPVCRNDISWNFEKFLVGPDGEPYKRYSRNFLTIDIEPDIKELLERI 1230879 Score = 43.1 bits (100), Expect = 0.001, Method: Compositional matrix adjust. Identities = 26/68 (38%), Positives = 35/68 (51%), Gaps = 2/68 (3%) Frame = -3 Query 41 YEYGALTLNGEEYIQFKQFAGKHVLFVNVAAYXGLAAQ-YPELNALQEELKNFGVIVLAF 99 Y A L+GE + F GK VL NVA+ G + Y ++N L G+++L Sbjct 1231870 YGLTAKLLSGELF-SFSALKGKVVLIENVASL*GTTTRDYTQMNELHSRYAAKGLVILGV 1231694 Query 100 PCNQFGKQ 107 PCNQFG Q Sbjct 1231693 PCNQFGHQ 1231670 > JXSJ01000061.1 Miichthys miiuy scaffold61, whole genome shotgun sequence Length=1726861 Score = 90.5 bits (223), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 47/114 (41%), Positives = 65/114 (57%), Gaps = 4/114 (4%) Frame = +3 Query 107 QEPGTNSEILLGLKYVCPGSGFVPSFQLFEKGDVNGEKEQKVFTFLKNSCP-PTSD---L 162 QE +N EI+ L++V PG GF P+F +FEK DVNG VF +LK+ P P D L Sbjct 671694 QENCSNGEIMKCLQHVRPGGGFQPNFTIFEKCDVNGTNTHPVFAYLKDKLPYPDDDPSSL 671873 Query 163 LGSSSQLFWEPMKVHDIRWNFEKFLVGPDGVPVMHWFHQAPVSTVKSDILEYLK 216 + L W P+ D+ WNFEKF+VGP+G P + + P ++ DI L+ Sbjct 671874 MQDPKFLIWSPINRTDVSWNFEKFIVGPEGEPFKRYSKKFPTIDIEPDIQRLLR 672035 Score = 48.9 bits (115), Expect = 2e-05, Method: Composition-based stats. Identities = 30/73 (41%), Positives = 42/73 (58%), Gaps = 3/73 (4%) Frame = +3 Query 36 VTGTIYEYGALTLNGEEYIQFKQFAGKHVLFVNVAAYXGLAAQ-YPELNALQEELKNFGV 94 + T Y+ A TL G+ + F F G+ VL NVA+ G + + ELN LQ + + + Sbjct 670965 IAKTFYDLRATTLEGDS-VDFNVFRGRVVLIENVASL*GTTTRDFSELNQLQSKYPH-RL 671138 Query 95 IVLAFPCNQFGKQ 107 +VL FPCNQFG Q Sbjct 671139 VVLGFPCNQFGYQ 671177 > JXSJ01002762.1 Miichthys miiuy scaffold2762, whole genome shotgun sequence Length=6586 Score = 87.0 bits (214), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 62/171 (36%), Positives = 83/171 (49%), Gaps = 11/171 (6%) Frame = -1 Query 27 NRKVDCNK--GVTGTIYEYGALTLNGEEYIQFKQFAGKHVLFVNVAAYXGLAAQYPELNA 84 N + C + G+T TIY+ T+ G F GK +L VNVA+ GL QY L Sbjct 4543 NPETHCKEQNGMTQTIYDIPLKTIEGSSQT-LADFQGKVLLVVNVASKCGLTPQYAGLEK 4367 Query 85 LQEELKNFGVIVLAFPCNQFGKQEPGTNSEILLGLKYVCPGSGFVPSFQLFEKGDVNGEK 144 L EE + G+ VL FP N F +QEPG++ EI K C + F LF K V G Sbjct 4366 LYEEHREAGLEVLGFPANDFREQEPGSDEEI----KAFC-SLNYAVQFPLFSKIAVTGAD 4202 Query 145 EQKVFTFLKNSCPPTSDLLGSSSQLFW---EPMKVHDIRWNFEKFLVGPDG 192 ++ L + P T+ +L EP + ++ WNFEKFLV DG Sbjct 4201 RHPLYRLLTEAQPQTTGEGPMRERLKGYGIEPGPLPEVLWNFEKFLVSRDG 4049 > JXSJ01000009.1 Miichthys miiuy scaffold9, whole genome shotgun sequence Length=6752331 Score = 51.2 bits (121), Expect(2) = 1e-14, Method: Composition-based stats. Identities = 19/42 (45%), Positives = 29/42 (69%), Gaps = 0/42 (0%) Frame = -1 Query 153 KNSCPPTSDLLGSSSQLFWEPMKVHDIRWNFEKFLVGPDGVP 194 + S P + ++G + +W P+ V+DIRWNFEKFL+ DG+P Sbjct 4882929 QESLPFVNPVIGDIKKFYWSPINVNDIRWNFEKFLITADGMP 4882804 Score = 48.9 bits (115), Expect(2) = 1e-14, Method: Compositional matrix adjust. Identities = 24/46 (52%), Positives = 30/46 (65%), Gaps = 0/46 (0%) Frame = -2 Query 111 TNSEILLGLKYVCPGSGFVPSFQLFEKGDVNGEKEQKVFTFLKNSC 156 N E L LKYV PG GFVP F +F + +VNG E+ +FT+LK C Sbjct 4883135 VNHETLNILKYVRPGGGFVPKFPIFARVEVNGLNEEPLFTYLKVLC 4882998 Score = 43.1 bits (100), Expect = 0.001, Method: Compositional matrix adjust. Identities = 32/115 (28%), Positives = 44/115 (38%), Gaps = 40/115 (35%) Frame = -1 Query 39 TIYEYGALTLNGEEYIQFKQFAGKHVLFVNVAAYXGLAA--------------------- 77 +IY++ A TL+G+ + + GK +L +NVA + G Sbjct 4884180 SIYDFSAETLDGQ-LVPLSNYRGKVLLIINVATF*GSTIEEVIFCKSSD*LQSFHIIS*H 4884004 Query 78 ------------------QYPELNALQEELKNFGVIVLAFPCNQFGKQEPGTNSE 114 QY LNAL E + VL F CNQFG Q PG +E Sbjct 4884003 IICAVIFMKGI*FCVPFPQYHRLNALMEMFGDIRFTVLGFSCNQFGLQSPGRYTE 4883839 > JXSJ01000525.1 Miichthys miiuy scaffold525, whole genome shotgun sequence Length=204830 Score = 55.8 bits (133), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 36/89 (40%), Positives = 49/89 (55%), Gaps = 6/89 (7%) Frame = +2 Query 65 LFVNVAAYXGLAAQ-YPELNALQEELKNFGVIVLAFPCNQFGKQEPGTNSEILLGLKYVC 123 L VNVA+ G + Y E+ LQ + + VLAFPCNQFG+QEPG++ EI ++ V Sbjct 179954 LVVNVASECGFTEEHYKEMQQLQRDFGPYHFNVLAFPCNQFGQQEPGSDKEIDSFVRRV- 180130 Query 124 PGSGFVPSFQLFEKGDVNGEKEQKVFTFL 152 + SF LF K V G V+ +L Sbjct 180131 ----YGVSFPLFSKIAVVGTGANNVYKYL 180205 > JXSJ01000013.1 Miichthys miiuy scaffold13, whole genome shotgun sequence Length=5370402 Score = 44.7 bits (104), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 31/89 (35%), Positives = 41/89 (46%), Gaps = 6/89 (7%) Frame = -1 Query 65 LFVNVAAY-XGLAAQYPELNALQEELKNFGVIVLAFPCNQFGKQEPGTNSEILLGLKYVC 123 L VNVA++ A Y + L EL VLAFPC QFG E GT+ +I K Sbjct 1302507 LVVNVASHCEQTEANYRSMQELHRELGTSHFNVLAFPCGQFGDTETGTSRDIEAFAK--- 1302337 Query 124 PGSGFVPSFQLFEKGDVNGEKEQKVFTFL 152 S + +F F + + G + F FL Sbjct 1302336 --STYGVTFPFFSRIKIMGSEADPAFRFL 1302256 > JXSJ01000239.1 Miichthys miiuy scaffold239, whole genome shotgun sequence Length=424162 Score = 38.9 bits (89), Expect = 0.036, Method: Compositional matrix adjust. Identities = 19/55 (35%), Positives = 29/55 (53%), Gaps = 10/55 (18%) Frame = -3 Query 155 SCPPTSDLLGSSSQLFWEPMKVHDIRWNFEKFLVGPDGVPVMHWFHQAPVSTVKS 209 +CPP D LG+ + DI+WNF + L+GPD P M + +S V++ Sbjct 118277 NCPPVGDNLGN----------LTDIKWNFGEILLGPDEKPAMR*YPSVNISEVQA 118143 Lambda K H a alpha 0.322 0.139 0.433 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 21598866240 Database: /export/cursos/20428/BI/genomes/2016/Miichthys_miiuy/genome.fa Posted date: Oct 21, 2016 4:44 PM Number of letters in database: 619,300,777 Number of sequences in database: 6,294 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 13 Window for multiple hits: 40