Command line: [exonerate -m p2g --showtargetgff -q gpx5_hs.aa.fa.canviat -t genomegpx5_JXSJ01000010.1.fa]
Hostname: [ws101074U]

C4 Alignment:
------------
         Query: SPP00000036_2.0 # Protein # Glutathione peroxidase 5 (GPx5) # Human 
        Target: JXSJ01000010.1:subseq(2769482,101618) Miichthys miiuy scaffold10, whole genome shotgun sequence
         Model: protein2genome:local
     Raw score: 585
   Query range: 29 -> 221
  Target range: 49993 -> 51618

    30 : MetAspCysHisLysAspGluLysGlyThrIleTyrAspTyrGluAlaIleAlaLeuAsn :    49
         ..!.!.|||.!...!! !  ! ! ||||||||||||.!.|||...|||!  .!!||||||
         GlnGlnCysGluSerAlaThrAspGlyThrIleTyrGlnTyrSerAlaLysThrLeuAsn
 49994 : CAGCAGTGTGAGTCAGCCACAGATGGCACCATTTACCAATACAGTGCCAAGACTCTAAAC : 50051

    50 : LysAsnGluTyrValSerPheLysGlnTyrValGlyLysHisIleLeuPheValAsnVal :    69
           !!:!...  !|||!:!|||!...!.|||..!|||:!!  !:!!|||||||||||||||
         GlySerArgThrValAsnPheSerAspTyrThrGlyGluSerValLeuPheValAsnVal
 50052 : GGGAGTCGCACTGTGAACTTCAGTGACTACACGGGCGAGAGTGTCCTCTTCGTCAACGTG : 50111

    70 : AlaThrTyrCysGlyLeuThrAlaGlnTyrPro{G}  >>>> Target Intron 1 > :    81
         |||||||||!! |||! !|||  !||||||  !{|}            92 bp       
         AlaThrTyr***GlyTyrThrPheGlnTyrVal{G}++                      
 50112 : GCCACATACTGAGGATACACCTTCCAGTATGTG{G}gt...................... : 50150

    82 : >>>  {lu}LeuAsnAlaLeuGlnGluGluLeuLysProTyrGlyLeuValValLeuGly :    98
              {||}||||||||||||!!.||||||:!!||||||  !||||||..!:!!||||||
            ++{lu}LeuAsnAlaLeuHisGluGluMetLysProLeuGlyLeuThrIleLeuGly
 50151 : ...ag{AA}CTGAATGCACTACATGAGGAAATGAAACCTCTTGGACTCACCATCCTCGGC : 50290

    99 : PheProCysAsnGlnPheGlyLysGlnGluProGlyAspAsnLysGluIleLeuProGly :   118
         ||||||||||||||||||||||||||||||||||||.!.!!. ! |||||||||||||||
         PheProCysAsnGlnPheGlyLysGlnGluProGlyGlnLysHisGluIleLeuProGly
 50291 : TTTCCCTGCAACCAATTTGGGAAACAGGAACCAGGGCAGAAACACGAAATTCTGCCAGGT : 50350

   119 : Leu{Ly}  >>>> Target Intron 2 >>>>  {s}TyrValArgProGlyGlyGly :   127
         |||{||}            547 bp           {|}:!!||||||||||||..!|||
         Leu{Ly}++                         ++{s}HisValArgProGlyAsnGly
 50351 : TTA{AA}gt.........................ag{G}CATGTCAGACCAGGCAATGGA : 50924

   128 : PheValProSerPheGlnLeuPheGluLysGlyAspValAsnGlyGluLysGluGlnLys :   147
         |||||||||!:!|||! !||||||!!:||||||||||||||||||:!! ! ||||||:!!
         PheValProAsnPheLeuLeuPheAspLysGlyAspValAsnGlyLysAspGluGlnGlu
 50925 : TTTGTTCCAAACTTCCTGCTGTTTGACAAAGGTGATGTGAATGGAAAAGACGAGCAAGAG : 50984

   148 : ValPheSerPheLeuLys  >>>> Target Intron 3 >>>>  HisSerCysProH :   158
         ||||||!!!|||||||||            407 bp           :!!|||||||||!
         ValPheThrPheLeuLys++                         ++AsnSerCysProP
 50985 : GTTTTCACTTTTCTCAAGgt.........................agAACTCCTGCCCTC : 51424

   159 : isProSerGluIleLeuGlyThr<->PheLysSerIleSerTrpAspProValLysValH :   177
             !.!!!!:! !!!!|||!.!     !!!.!!!:!:! !|||.!.|||:!!|||:!! 
         roValGlyAspAsnPheGlyAsnProThrAsnArgLeuPheTrpGlnProLeuLysMetS
 51425 : CAGTCGGAGACAACTTCGGCAACCCCACCAACAGATTGTTCTGGCAGCCTCTGAAGATGA : 51484

   178 : isAspIleArgTrpAsnPheGluLysPheLeuValGlyProAspGlyIleProValMetA :   197
          !||||||!:!||||||||||||||||||||||||||||||||||||!  ||||||||||
         erAspIleLysTrpAsnPheGluLysPheLeuValGlyProAspGlyLysProValMetA
 51485 : GCGACATCAAGTGGAACTTCGAAAAGTTTCTGGTGGGCCCAGACGGGAAGCCAGTGATGA : 51544

   198 : rgTrpSerHisArgAlaThrValSerSerValLysThrAspIleLeuAlaTyrLeuLysG :   217
         |||||  !!  !!!!.!!.!:!!|||..!|||::!:!!||||||! !  !||||||   :
         rgTrpHisProSerValAsnIleSerGluValArgSerAspIleArgLysTyrLeuLeuL
 51545 : GGTGGCACCCAAGTGTCAACATTTCTGAAGTCCGATCTGACATCCGCAAATACCTGCTCA : 51604

   218 : lnPheLysThrLys :   221
         !!.!. ! ||||||
         ysLeuTyrThrLys
 51605 : AACTATACACAAAG : 51618

vulgar: SPP00000036_2.0 29 221 . JXSJ01000010.1:subseq(2769482,101618) 49993 51618 + 585 M 51 153 S 0 1 5 0 2 I 0 88 3 0 2 S 1 2 M 38 114 S 0 2 5 0 2 I 0 543 3 0 2 S 1 1 M 33 99 5 0 2 I 0 403 3 0 2 M 12 36 G 0 3 M 56 168
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2016-12-01
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
JXSJ01000010.1:subseq(2769482,101618)	exonerate:protein2genome:local	gene	49994	51618	585	+	.	gene_id 1 ; sequence SPP00000036_2.0 ; gene_orientation +
JXSJ01000010.1:subseq(2769482,101618)	exonerate:protein2genome:local	cds	49994	50147	.	+	.	
JXSJ01000010.1:subseq(2769482,101618)	exonerate:protein2genome:local	exon	49994	50147	.	+	.	insertions 0 ; deletions 0
JXSJ01000010.1:subseq(2769482,101618)	exonerate:protein2genome:local	splice5	50148	50149	.	+	.	intron_id 1 ; splice_site "GT"
JXSJ01000010.1:subseq(2769482,101618)	exonerate:protein2genome:local	intron	50148	50239	.	+	.	intron_id 1
JXSJ01000010.1:subseq(2769482,101618)	exonerate:protein2genome:local	splice3	50238	50239	.	+	.	intron_id 0 ; splice_site "AG"
JXSJ01000010.1:subseq(2769482,101618)	exonerate:protein2genome:local	cds	50240	50357	.	+	.	
JXSJ01000010.1:subseq(2769482,101618)	exonerate:protein2genome:local	exon	50240	50357	.	+	.	insertions 0 ; deletions 0
JXSJ01000010.1:subseq(2769482,101618)	exonerate:protein2genome:local	splice5	50358	50359	.	+	.	intron_id 2 ; splice_site "GT"
JXSJ01000010.1:subseq(2769482,101618)	exonerate:protein2genome:local	intron	50358	50904	.	+	.	intron_id 2
JXSJ01000010.1:subseq(2769482,101618)	exonerate:protein2genome:local	splice3	50903	50904	.	+	.	intron_id 1 ; splice_site "AG"
JXSJ01000010.1:subseq(2769482,101618)	exonerate:protein2genome:local	cds	50905	51004	.	+	.	
JXSJ01000010.1:subseq(2769482,101618)	exonerate:protein2genome:local	exon	50905	51004	.	+	.	insertions 0 ; deletions 0
JXSJ01000010.1:subseq(2769482,101618)	exonerate:protein2genome:local	splice5	51005	51006	.	+	.	intron_id 3 ; splice_site "GT"
JXSJ01000010.1:subseq(2769482,101618)	exonerate:protein2genome:local	intron	51005	51411	.	+	.	intron_id 3
JXSJ01000010.1:subseq(2769482,101618)	exonerate:protein2genome:local	splice3	51410	51411	.	+	.	intron_id 2 ; splice_site "AG"
JXSJ01000010.1:subseq(2769482,101618)	exonerate:protein2genome:local	cds	51412	51618	.	+	.	
JXSJ01000010.1:subseq(2769482,101618)	exonerate:protein2genome:local	exon	51412	51618	.	+	.	insertions 3 ; deletions 0
JXSJ01000010.1:subseq(2769482,101618)	exonerate:protein2genome:local	similarity	49994	51618	585	+	.	alignment_id 1 ; Query SPP00000036_2.0 ; Align 49994 30 153 ; Align 50242 82 114 ; Align 50906 121 99 ; Align 51412 154 36 ; Align 51451 166 168
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis