TBLASTN 2.2.30+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: /export/cursos/20428/BI/genomes/2016/Miichthys_miiuy/genome.fa 6,294 sequences; 619,300,777 total letters Query= SPP00000036_2.0 # Protein # Glutathione peroxidase 5 (GPx5) # Human Length=221 Score E Sequences producing significant alignments: (Bits) Value JXSJ01005752.1 Miichthys miiuy scaffold5752, whole genome shotg... 110 5e-27 JXSJ01000122.1 Miichthys miiuy scaffold122, whole genome shotgu... 110 1e-25 JXSJ01000043.1 Miichthys miiuy scaffold43, whole genome shotgun... 100 4e-22 JXSJ01000061.1 Miichthys miiuy scaffold61, whole genome shotgun... 99.8 7e-22 JXSJ01002762.1 Miichthys miiuy scaffold2762, whole genome shotg... 89.7 9e-19 JXSJ01000010.1 Miichthys miiuy scaffold10, whole genome shotgun... 57.0 2e-17 JXSJ01000525.1 Miichthys miiuy scaffold525, whole genome shotgu... 68.6 8e-12 JXSJ01000009.1 Miichthys miiuy scaffold9, whole genome shotgun ... 59.7 5e-09 JXSJ01000013.1 Miichthys miiuy scaffold13, whole genome shotgun... 48.1 3e-05 JXSJ01000006.1 Miichthys miiuy scaffold6, whole genome shotgun ... 39.7 0.021 > JXSJ01005752.1 Miichthys miiuy scaffold5752, whole genome shotgun sequence Length=1069 Score = 110 bits (276), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 56/115 (49%), Positives = 71/115 (62%), Gaps = 4/115 (3%) Frame = +1 Query 107 QEPGDNKEILPGLKYVRPGGGFVPSFQLFEKGDVNGEKEQKVFSFLKHSCPHPSEILGTF 166 QE N+EIL LKYVRPG GF P FQL EK DVNG+ +F FL+ S P PS+ F Sbjct 103 QENCKNEEILLSLKYVRPGNGFEPKFQLLEKVDVNGKDAHSLFVFLRESLPSPSDEPCAF 282 Query 167 ----KSISWDPVKVHDIRWNFEKFLVGPDGIPVMRWSHRATVSSVKTDILAYLKQ 217 K + W PV +D+ WNFEKFL+GPDG+P R+S + + ++ DI L Q Sbjct 283 ITDPKLVIWSPVCRNDVAWNFEKFLIGPDGVPFKRYSRKFLTNDIEGDIKKLLNQ 447 > JXSJ01000122.1 Miichthys miiuy scaffold122, whole genome shotgun sequence Length=783778 Score = 110 bits (276), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 56/115 (49%), Positives = 71/115 (62%), Gaps = 4/115 (3%) Frame = -2 Query 107 QEPGDNKEILPGLKYVRPGGGFVPSFQLFEKGDVNGEKEQKVFSFLKHSCPHPSEILGTF 166 QE N+EIL LKYVRPG GF P FQL EK DVNG+ +F FL+ S P PS+ F Sbjct 469341 QENCKNEEILLSLKYVRPGNGFEPKFQLLEKVDVNGKDAHSLFVFLRESLPSPSDEPCAF 469162 Query 167 ----KSISWDPVKVHDIRWNFEKFLVGPDGIPVMRWSHRATVSSVKTDILAYLKQ 217 K + W PV +D+ WNFEKFL+GPDG+P R+S + + ++ DI L Q Sbjct 469161 ITDPKLVIWSPVCRNDVAWNFEKFLIGPDGVPFKRYSRKFLTNDIEGDIKKLLNQ 468997 Score = 53.1 bits (126), Expect = 8e-07, Method: Composition-based stats. Identities = 30/70 (43%), Positives = 39/70 (56%), Gaps = 2/70 (3%) Frame = -2 Query 39 TIYDYEAIALNKNEYVSFKQYVGKHILFVNVATYCGLTAQ-YPELNALQEELKPYGLVVL 97 T YD +A L E +F GK +L NVA+ G T + Y ++N L + GLV+L Sbjct 470574 TFYDLKANLLT-GEAFNFSSLQGKVVLIENVASL*GTTTRDYTQMNELHDRYASKGLVIL 470398 Query 98 GFPCNQFGKQ 107 G PCNQFG Q Sbjct 470397 GVPCNQFGHQ 470368 > JXSJ01000043.1 Miichthys miiuy scaffold43, whole genome shotgun sequence Length=2573463 Score = 100 bits (249), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 53/117 (45%), Positives = 69/117 (59%), Gaps = 4/117 (3%) Frame = -2 Query 107 QEPGDNKEILPGLKYVRPGGGFVPSFQLFEKGDVNGEKEQKVFSFLKHSCPHPSE----I 162 QE N+EIL LKYVRPG GF P F++ EK +VNG+ +F FLK PS+ + Sbjct 1231226 QENSKNEEILNSLKYVRPGNGFEPKFKILEKVNVNGKDAHPLFVFLKDKLRFPSDDAMAL 1231047 Query 163 LGTFKSISWDPVKVHDIRWNFEKFLVGPDGIPVMRWSHRATVSSVKTDILAYLKQFK 219 + + I W PV +DI WNFEKFLVGPDG P R+S ++ DI L++ K Sbjct 1231046 MNDPQCIIWSPVCRNDISWNFEKFLVGPDGEPYKRYSRNFLTIDIEPDIKELLERIK 1230876 Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 27/61 (44%), Positives = 33/61 (54%), Gaps = 1/61 (2%) Frame = -3 Query 48 LNKNEYVSFKQYVGKHILFVNVATYCGLTAQ-YPELNALQEELKPYGLVVLGFPCNQFGK 106 L E SF GK +L NVA+ G T + Y ++N L GLV+LG PCNQFG Sbjct 1231852 LLSGELFSFSALKGKVVLIENVASL*GTTTRDYTQMNELHSRYAAKGLVILGVPCNQFGH 1231673 Query 107 Q 107 Q Sbjct 1231672 Q 1231670 > JXSJ01000061.1 Miichthys miiuy scaffold61, whole genome shotgun sequence Length=1726861 Score = 99.8 bits (247), Expect = 7e-22, Method: Compositional matrix adjust. Identities = 50/118 (42%), Positives = 71/118 (60%), Gaps = 4/118 (3%) Frame = +3 Query 107 QEPGDNKEILPGLKYVRPGGGFVPSFQLFEKGDVNGEKEQKVFSFLKHSCPH----PSEI 162 QE N EI+ L++VRPGGGF P+F +FEK DVNG VF++LK P+ PS + Sbjct 671694 QENCSNGEIMKCLQHVRPGGGFQPNFTIFEKCDVNGTNTHPVFAYLKDKLPYPDDDPSSL 671873 Query 163 LGTFKSISWDPVKVHDIRWNFEKFLVGPDGIPVMRWSHRATVSSVKTDILAYLKQFKT 220 + K + W P+ D+ WNFEKF+VGP+G P R+S + ++ DI L+ K+ Sbjct 671874 MQDPKFLIWSPINRTDVSWNFEKFIVGPEGEPFKRYSKKFPTIDIEPDIQRLLRLTKS 672047 Score = 57.0 bits (136), Expect = 4e-08, Method: Composition-based stats. Identities = 33/70 (47%), Positives = 43/70 (61%), Gaps = 3/70 (4%) Frame = +3 Query 39 TIYDYEAIALNKNEYVSFKQYVGKHILFVNVATYCGLTAQ-YPELNALQEELKPYGLVVL 97 T YD A L + + V F + G+ +L NVA+ G T + + ELN LQ + P+ LVVL Sbjct 670974 TFYDLRATTL-EGDSVDFNVFRGRVVLIENVASL*GTTTRDFSELNQLQSKY-PHRLVVL 671147 Query 98 GFPCNQFGKQ 107 GFPCNQFG Q Sbjct 671148 GFPCNQFGYQ 671177 > JXSJ01002762.1 Miichthys miiuy scaffold2762, whole genome shotgun sequence Length=6586 Score = 89.7 bits (221), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 60/166 (36%), Positives = 81/166 (49%), Gaps = 13/166 (8%) Frame = -1 Query 39 TIYDYEAIALNKNEYVSFKQYVGKHILFVNVATYCGLTAQYPELNALQEELKPYGLVVLG 98 TIYD + + + + GK +L VNVA+ CGLT QY L L EE + GL VLG Sbjct 4501 TIYDIPLKTIEGSSQ-TLADFQGKVLLVVNVASKCGLTPQYAGLEKLYEEHREAGLEVLG 4325 Query 99 FPCNQFGKQEPGDNKEI--LPGLKYVRPGGGFVPSFQLFEKGDVNGEKEQKVFSFLKHSC 156 FP N F +QEPG ++EI L Y F LF K V G ++ L + Sbjct 4324 FPANDFREQEPGSDEEIKAFCSLNYAV-------QFPLFSKIAVTGADRHPLYRLLTEAQ 4166 Query 157 PHPS---EILGTFKSISWDPVKVHDIRWNFEKFLVGPDGIPVMRWS 199 P + + K +P + ++ WNFEKFLV DG V R++ Sbjct 4165 PQTTGEGPMRERLKGYGIEPGPLPEVLWNFEKFLVSRDGQVVARFA 4028 > JXSJ01000010.1 Miichthys miiuy scaffold10, whole genome shotgun sequence Length=6703581 Score = 57.0 bits (136), Expect(2) = 2e-17, Method: Compositional matrix adjust. Identities = 25/32 (78%), Positives = 27/32 (84%), Gaps = 0/32 (0%) Frame = +3 Query 89 LKPYGLVVLGFPCNQFGKQEPGDNKEILPGLK 120 +KP GL +LGFPCNQFGKQEPG EILPGLK Sbjct 2819745 MKPLGLTILGFPCNQFGKQEPGQKHEILPGLK 2819840 Score = 53.5 bits (127), Expect(2) = 2e-17, Method: Composition-based stats. Identities = 25/48 (52%), Positives = 29/48 (60%), Gaps = 0/48 (0%) Frame = +1 Query 32 CHKDEKGTIYDYEAIALNKNEYVSFKQYVGKHILFVNVATYCGLTAQY 79 C GTIY Y A LN + V+F Y G+ +LFVNVATY G T QY Sbjct 2819482 CESATDGTIYQYSAKTLNGSRTVNFSDYTGESVLFVNVATY*GYTFQY 2819625 Score = 77.0 bits (188), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 37/77 (48%), Positives = 49/77 (64%), Gaps = 1/77 (1%) Frame = +3 Query 146 QKVFSFLKHSCPHPSEILGT-FKSISWDPVKVHDIRWNFEKFLVGPDGIPVMRWSHRATV 204 + VFS ++SCP + G + W P+K+ DI+WNFEKFLVGPDG PVMRW + Sbjct 2820870 RSVFSATQNSCPPVGDNFGNPTNRLFWQPLKMSDIKWNFEKFLVGPDGKPVMRWHPSVNI 2821049 Query 205 SSVKTDILAYLKQFKTK 221 S V++DI YL + TK Sbjct 2821050 SEVRSDIRKYLLKLYTK 2821100 Score = 55.8 bits (133), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 25/36 (69%), Positives = 32/36 (89%), Gaps = 0/36 (0%) Frame = +1 Query 120 KYVRPGGGFVPSFQLFEKGDVNGEKEQKVFSFLKHS 155 ++VRPG GFVP+F LF+KGDVNG+ EQ+VF+FLK S Sbjct 2820385 RHVRPGNGFVPNFLLFDKGDVNGKDEQEVFTFLKVS 2820492 > JXSJ01000525.1 Miichthys miiuy scaffold525, whole genome shotgun sequence Length=204830 Score = 68.6 bits (166), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 40/89 (45%), Positives = 51/89 (57%), Gaps = 6/89 (7%) Frame = +2 Query 65 LFVNVATYCGLTAQ-YPELNALQEELKPYGLVVLGFPCNQFGKQEPGDNKEILPGLKYVR 123 L VNVA+ CG T + Y E+ LQ + PY VL FPCNQFG+QEPG +KEI ++ V Sbjct 179954 LVVNVASECGFTEEHYKEMQQLQRDFGPYHFNVLAFPCNQFGQQEPGSDKEIDSFVRRV- 180130 Query 124 PGGGFVPSFQLFEKGDVNGEKEQKVFSFL 152 + SF LF K V G V+ +L Sbjct 180131 ----YGVSFPLFSKIAVVGTGANNVYKYL 180205 > JXSJ01000009.1 Miichthys miiuy scaffold9, whole genome shotgun sequence Length=6752331 Score = 59.7 bits (143), Expect = 5e-09, Method: Composition-based stats. Identities = 27/67 (40%), Positives = 38/67 (57%), Gaps = 4/67 (6%) Frame = -1 Query 139 DVNGEKEQKVFSFLKHS----CPHPSEILGTFKSISWDPVKVHDIRWNFEKFLVGPDGIP 194 D++ VF + HS P + ++G K W P+ V+DIRWNFEKFL+ DG+P Sbjct 4882983 DISAVSAADVFIVISHSPQESLPFVNPVIGDIKKFYWSPINVNDIRWNFEKFLITADGMP 4882804 Query 195 VMRWSHR 201 R S+R Sbjct 4882803 FRR*SYR 4882783 Score = 53.9 bits (128), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 25/45 (56%), Positives = 32/45 (71%), Gaps = 0/45 (0%) Frame = -2 Query 112 NKEILPGLKYVRPGGGFVPSFQLFEKGDVNGEKEQKVFSFLKHSC 156 N E L LKYVRPGGGFVP F +F + +VNG E+ +F++LK C Sbjct 4883132 NHETLNILKYVRPGGGFVPKFPIFARVEVNGLNEEPLFTYLKVLC 4882998 Score = 47.8 bits (112), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 36/115 (31%), Positives = 43/115 (37%), Gaps = 40/115 (35%) Frame = -1 Query 39 TIYDYEAIALNKNEYVSFKQYVGKHILFVNVATYCGLTA--------------------- 77 +IYD+ A L+ + V Y GK +L +NVAT+ G T Sbjct 4884180 SIYDFSAETLD-GQLVPLSNYRGKVLLIINVATF*GSTIEEVIFCKSSD*LQSFHIIS*H 4884004 Query 78 ------------------QYPELNALQEELKPYGLVVLGFPCNQFGKQEPGDNKE 114 QY LNAL E VLGF CNQFG Q PG E Sbjct 4884003 IICAVIFMKGI*FCVPFPQYHRLNALMEMFGDIRFTVLGFSCNQFGLQSPGRYTE 4883839 > JXSJ01000013.1 Miichthys miiuy scaffold13, whole genome shotgun sequence Length=5370402 Score = 48.1 bits (113), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 30/89 (34%), Positives = 41/89 (46%), Gaps = 6/89 (7%) Frame = -1 Query 65 LFVNVATYCGLT-AQYPELNALQEELKPYGLVVLGFPCNQFGKQEPGDNKEILPGLKYVR 123 L VNVA++C T A Y + L EL VL FPC QFG E G +++I K Sbjct 1302507 LVVNVASHCEQTEANYRSMQELHRELGTSHFNVLAFPCGQFGDTETGTSRDIEAFAKST- 1302331 Query 124 PGGGFVPSFQLFEKGDVNGEKEQKVFSFL 152 + +F F + + G + F FL Sbjct 1302330 ----YGVTFPFFSRIKIMGSEADPAFRFL 1302256 > JXSJ01000006.1 Miichthys miiuy scaffold6, whole genome shotgun sequence Length=7996890 Score = 39.7 bits (91), Expect = 0.021, Method: Compositional matrix adjust. Identities = 21/48 (44%), Positives = 26/48 (54%), Gaps = 1/48 (2%) Frame = -3 Query 61 GKHILFVNVATYCGLT-AQYPELNALQEELKPYGLVVLGFPCNQFGKQ 107 G + VNVA+ G T Y +L + GL +LGFPCNQFG Q Sbjct 3978781 GDVCIIVNVASK*GKTRVNYTQLAGMHASYAEKGLRILGFPCNQFGGQ 3978638 Lambda K H a alpha 0.320 0.138 0.430 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 21598866240 Database: /export/cursos/20428/BI/genomes/2016/Miichthys_miiuy/genome.fa Posted date: Oct 21, 2016 4:44 PM Number of letters in database: 619,300,777 Number of sequences in database: 6,294 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 13 Window for multiple hits: 40