Command line: [exonerate -m p2g --showtargetgff -q gpx4b_zf.aa.fa.canviat -t genomegpx4b_JXSJ01000014.1.fa]
Hostname: [ws101097u]

C4 Alignment:
------------
         Query: SPP00000622_2.0 # Protein # Glutathione peroxidase 4b (GPx4b) # Zebrafish 
        Target: JXSJ01000014.1:subseq(1,58326) Miichthys miiuy scaffold14, whole genome shotgun sequence:[revcomp]
         Model: protein2genome:local
     Raw score: 516
   Query range: 0 -> 130
  Target range: 8326 -> 7141

    1 : PheArgGlyTyrValCysIleIleThrAsnValAlaSerLysUnkGlyLysThrProValAs :   21
        |||||||||  !|||  !||||||||||||||||||||||||   |||||||||! !|||||
        PheArgGlySerValValIleIleThrAsnValAlaSerLys***GlyLysThrLeuValAs
 8326 : ttcaggggTAGTGTTGTCATCATTACCAACGTTGCCTCTAAATGAGGTAAAACCCTAGTAAA : 8266

   22 : nTyrThrGlnLeuAlaAlaMetHisValThrTyrAlaGluLysGlyLeuArgIleLeuGlyP :   42
        ||||:!!|||!!!|||! !:!!|||!.!! !|||||||||!:!|||||||||||||||!.!|
        nTyrSerGlnPheAlaAspLeuHisAlaArgTyrAlaGluArgGlyLeuArgIleLeuAlaP
 8265 : CTACTCTCAGTTTGCGGACTTGCACGCCAGGTATGCTGAGAGAGGTTTACGCATCCTTGCCT : 8203

   43 : heProCysAsnGlnPheGlyLysGln  >>>> Target Intron 1 >>>>  GluProG :   53
        |||||! !||||||||||||!!.|||            257 bp           |||||||
        heProSerAsnGlnPheGlyAsnGln++                         ++GluProG
 8202 : TCCCTTCTAACCAGTTTGGGAACCAGgt.........................aggAGCCAG : 7913

   54 : lySerGluAlaGluIleLysGluPheAlaLysGlyTyrAsnAlaGluPheAspLeuPheSer :   73
        ||!:!|||.!!:!!||||||:!!||||||:!!..!|||:!!!.!:!!||||||:!!||||||
        lyAsnGluThrGlnIleLysGlnPheAlaGluSerTyrHisValGlnPheAspMetPheSer
 7912 : GCAATGAAACTCAGATCAAGCAGTTTGCCGAGTCCTATCATGTTCAGTTTGACATGTTCAGT : 7853

   74 : LysIleAspValAsnGlyAspAlaAlaHisProLeuTrpLysTrpMetLysGluGlnProLy :   94
        ||||||:!!||||||||||||  !|||||||||||||||||||||:!!|||.!.||||||!!
        LysIleAsnValAsnGlyAspAsnAlaHisProLeuTrpLysTrpLeuLysAsnGlnProAs
 7852 : AAGATTAACGTGAACGGGGACAACGCTCATCCTCTGTGGAAGTGGCTGAAAAACCAGCCCAA : 7790

   95 : sGlyArgGlyThrLeuGly{As}  >>>> Target Intron 2 >>>>  {n}AsnIleL :  104
        .|||!:!|||  !||||||{||}            221 bp           {|}!:!||||
        nGlyLysGlyPheLeuGly{As}++                         ++{n}SerIleL
 7789 : TGGGAAAGGCTTCCTGGGA{AA}gt.........................ag{T}AGCATCA : 7539

  105 : ysTrpAsnPheThrLys  >>>> Target Intron 3 >>>>  PheLeuIleAspArgG :  115
        |||||||||||||||||            317 bp           |||||||||:!!||||
        ysTrpAsnPheThrLys++                         ++PheLeuIleAsnArgG
 7538 : AGTGGAATTTCACTAAGgt.........................agTTTTTGATCAACAGAG : 7189

  116 : luGlyGlnValValLysArgTyrGlyProMetAspAspProSerVal :  130
        |||||||||||||||||||||||||||||:!!|||||||||||||||
        luGlyGlnValValLysArgTyrGlyProLeuAspAspProSerVal
 7188 : AGGGTCAGGTGGTGAAGAGATACGGGCCACTGGATGATCCAAGTGTA : 7142

vulgar: SPP00000622_2.0 0 130 . JXSJ01000014.1:subseq(1,58326) 8326 7141 - 516 M 50 150 5 0 2 I 0 253 3 0 2 M 50 150 S 0 2 5 0 2 I 0 217 3 0 2 S 1 1 M 8 24 5 0 2 I 0 313 3 0 2 M 21 63
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2016-11-16
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
JXSJ01000014.1:subseq(1,58326)	exonerate:protein2genome:local	gene	7142	8326	516	-	.	gene_id 1 ; sequence SPP00000622_2.0 ; gene_orientation +
JXSJ01000014.1:subseq(1,58326)	exonerate:protein2genome:local	cds	8177	8326	.	-	.	
JXSJ01000014.1:subseq(1,58326)	exonerate:protein2genome:local	exon	8177	8326	.	-	.	insertions 0 ; deletions 0
JXSJ01000014.1:subseq(1,58326)	exonerate:protein2genome:local	splice5	8175	8176	.	-	.	intron_id 1 ; splice_site "GT"
JXSJ01000014.1:subseq(1,58326)	exonerate:protein2genome:local	intron	7920	8176	.	-	.	intron_id 1
JXSJ01000014.1:subseq(1,58326)	exonerate:protein2genome:local	splice3	7920	7921	.	-	.	intron_id 0 ; splice_site "ag"
JXSJ01000014.1:subseq(1,58326)	exonerate:protein2genome:local	cds	7768	7919	.	-	.	
JXSJ01000014.1:subseq(1,58326)	exonerate:protein2genome:local	exon	7768	7919	.	-	.	insertions 0 ; deletions 0
JXSJ01000014.1:subseq(1,58326)	exonerate:protein2genome:local	splice5	7766	7767	.	-	.	intron_id 2 ; splice_site "GT"
JXSJ01000014.1:subseq(1,58326)	exonerate:protein2genome:local	intron	7547	7767	.	-	.	intron_id 2
JXSJ01000014.1:subseq(1,58326)	exonerate:protein2genome:local	splice3	7547	7548	.	-	.	intron_id 1 ; splice_site "AG"
JXSJ01000014.1:subseq(1,58326)	exonerate:protein2genome:local	cds	7522	7546	.	-	.	
JXSJ01000014.1:subseq(1,58326)	exonerate:protein2genome:local	exon	7522	7546	.	-	.	insertions 0 ; deletions 0
JXSJ01000014.1:subseq(1,58326)	exonerate:protein2genome:local	splice5	7520	7521	.	-	.	intron_id 3 ; splice_site "gt"
JXSJ01000014.1:subseq(1,58326)	exonerate:protein2genome:local	intron	7205	7521	.	-	.	intron_id 3
JXSJ01000014.1:subseq(1,58326)	exonerate:protein2genome:local	splice3	7205	7206	.	-	.	intron_id 2 ; splice_site "ag"
JXSJ01000014.1:subseq(1,58326)	exonerate:protein2genome:local	cds	7142	7204	.	-	.	
JXSJ01000014.1:subseq(1,58326)	exonerate:protein2genome:local	exon	7142	7204	.	-	.	insertions 0 ; deletions 0
JXSJ01000014.1:subseq(1,58326)	exonerate:protein2genome:local	similarity	7142	8326	516	-	.	alignment_id 1 ; Query SPP00000622_2.0 ; Align 8327 1 150 ; Align 7920 51 150 ; Align 7546 102 24 ; Align 7205 110 63
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis