Command line: [exonerate -m p2g --showtargetgff -q gpx4a_zf.aa.fa.canviat -t genomegpx4a_JXSJ01000006.1.fa]
Hostname: [ws101097u]

C4 Alignment:
------------
         Query: SPP00000618_2.0 # Protein # Glutathione peroxidase 4a (GPx4a) # Zebrafish 
        Target: JXSJ01000006.1:subseq(3928208,100588) Miichthys miiuy scaffold6, whole genome shotgun sequence:[revcomp]
         Model: protein2genome:local
     Raw score: 438
   Query range: 0 -> 113
  Target range: 50588 -> 49160

     1 : PheThrTyrPheArgGlyLysValValIleIleThrAsnValAlaSerLysUnkGlyLys :    20
         |||  !! !  !|||||| ! |||  !||||||..!|||||||||||||||   ||||||
         PhePheSerAlaArgGlyAspValCysIleIleValAsnValAlaSerLys***GlyLys
 50588 : TTTTTTTCTGCCAGAGGGGACGTGTGCATCATTGTAAATGTAGCCTCCAAATGAGGAAAG : 50531

    21 : ThrProValAsnTyrSerGlnPheAlaGluMetHisAlaLysTyrSerGluArgGlyLeu :    40
         |||  !|||||||||!!!|||.!.|||! !|||||||||...|||:!!|||!:!||||||
         ThrArgValAsnTyrThrGlnLeuAlaGlyMetHisAlaSerTyrAlaGluLysGlyLeu
 50530 : ACCAGGGTAAACTACACTCAGCTAGCGGGAATGCACGCCTCCTATGCTGAGAAAGGTTTA : 50471

    41 : ArgIleLeuAlaPheProSerAsnGlnPheGlyArgGln  >>>> Target Intron  :    54
         |||||||||!.!||||||!!!|||||||||||| !!|||            280 bp   
         ArgIleLeuGlyPheProCysAsnGlnPheGlyGlyGln++                   
 50470 : CGCATCCTGGGCTTCCCCTGCAACCAGTTTGGAGGACAGgt................... : 50427

    55 : 1 >>>>  GluProGlyThrAsnSerGlnIleLysGluPheAlaLysSerTyrAsnAlaG :    71
                 ||||||||||||:!!:!!:!!||||||||||||||||||.!!||||||||||
               ++GluProGlyThrAspAlaGluIleLysGluPheAlaLysGlyTyrAsnAlaG
 50426 : ......agGAGCCAGGGACTGATGCAGAAATTAAAGAGTTCGCCAAAGGTTACAACGCAG : 50098

    72 : luPheAspMetPheSerLysIleAspValAsnGlyAspGlyAlaHisProLeuTrpLysT :    91
         ||||||||:!:|||||||||||||||||||||||||||..!|||||||||||||||||||
         luPheAspLeuPheSerLysIleAspValAsnGlyAspAsnAlaHisProLeuTrpLysT
 50097 : AGTTTGACCTCTTCAGTAAGATTGATGTGAATGGAGACAATGCTCACCCTTTGTGGAAGT : 50038

    92 : rpLeuLysAspGlnProAsnGlyLysGlyPheLeuGly{As}  >>>> Target Intr :   104
         ||:!!|||!  ||||||!!.|||||||||  !||||||{||}            809 bp
         rpMetLysAlaGlnProLysGlyLysGlyThrLeuGly{As}++                
 50037 : GGATGAAGGCACAGCCTAAAGGGAAAGGAACCCTGGGG{AA}gt................ : 49995

   105 : on 2 >>>>  {n}GlyIleLysTrpAsnPheThrLysVal :   113
                    {|}..!||||||||||||||||||||||||
                  ++{n}AsnIleLysTrpAsnPheThrLysVal
 49994 : .........ag{T}AACATCAAATGGAACTTCACAAAGGTA : 49161

vulgar: SPP00000618_2.0 0 113 . JXSJ01000006.1:subseq(3928208,100588) 50588 49160 - 438 M 53 159 5 0 2 I 0 276 3 0 2 M 50 150 S 0 2 5 0 2 I 0 805 3 0 2 S 1 1 M 9 27
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2016-11-16
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
JXSJ01000006.1:subseq(3928208,100588)	exonerate:protein2genome:local	gene	49161	50588	438	-	.	gene_id 1 ; sequence SPP00000618_2.0 ; gene_orientation +
JXSJ01000006.1:subseq(3928208,100588)	exonerate:protein2genome:local	cds	50430	50588	.	-	.	
JXSJ01000006.1:subseq(3928208,100588)	exonerate:protein2genome:local	exon	50430	50588	.	-	.	insertions 0 ; deletions 0
JXSJ01000006.1:subseq(3928208,100588)	exonerate:protein2genome:local	splice5	50428	50429	.	-	.	intron_id 1 ; splice_site "GT"
JXSJ01000006.1:subseq(3928208,100588)	exonerate:protein2genome:local	intron	50150	50429	.	-	.	intron_id 1
JXSJ01000006.1:subseq(3928208,100588)	exonerate:protein2genome:local	splice3	50150	50151	.	-	.	intron_id 0 ; splice_site "AG"
JXSJ01000006.1:subseq(3928208,100588)	exonerate:protein2genome:local	cds	49998	50149	.	-	.	
JXSJ01000006.1:subseq(3928208,100588)	exonerate:protein2genome:local	exon	49998	50149	.	-	.	insertions 0 ; deletions 0
JXSJ01000006.1:subseq(3928208,100588)	exonerate:protein2genome:local	splice5	49996	49997	.	-	.	intron_id 2 ; splice_site "GT"
JXSJ01000006.1:subseq(3928208,100588)	exonerate:protein2genome:local	intron	49189	49997	.	-	.	intron_id 2
JXSJ01000006.1:subseq(3928208,100588)	exonerate:protein2genome:local	splice3	49189	49190	.	-	.	intron_id 1 ; splice_site "aG"
JXSJ01000006.1:subseq(3928208,100588)	exonerate:protein2genome:local	cds	49161	49188	.	-	.	
JXSJ01000006.1:subseq(3928208,100588)	exonerate:protein2genome:local	exon	49161	49188	.	-	.	insertions 0 ; deletions 0
JXSJ01000006.1:subseq(3928208,100588)	exonerate:protein2genome:local	similarity	49161	50588	438	-	.	alignment_id 1 ; Query SPP00000618_2.0 ; Align 50589 1 159 ; Align 50150 54 150 ; Align 49188 105 27
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis