Command line: [exonerate -m p2g --showtargetgff -q gpx3b_zf.aa.fa.canviat -t genomegpx3b_JXSJ01000009.1.fa]
Hostname: [ws101097u]

C4 Alignment:
------------
         Query: SPP00000623_2.0 # Protein # Glutathione peroxidase 3b (GPx3b) # Zebrafish 
        Target: JXSJ01000009.1:subseq(4832795,101397) Miichthys miiuy scaffold9, whole genome shotgun sequence:[revcomp]
         Model: protein2genome:local
     Raw score: 597
   Query range: 0 -> 161
  Target range: 51397 -> 49999

     1 : MetAlaAlaAsnSerValTyrAspPheThrValGluThrLeuGluGluLysSerValSer :    20
         ||||||  !!!.|||:!!|||||||||:!!!.!|||||||||!!:! !:!!  !||| !!
         MetAlaAsnLysSerIleTyrAspPheSerAlaGluThrLeuAspGlyGlnLeuValPro
 51397 : ATGGCGAATAAATCAATCTATGATTTCTCTGCTGAGACCCTGGATGGACAGCTGGTTCCG : 51340

    21 : LeuAspIlePheArgGlyLysValLeuLeuIleMetAsnValAlaThrPheUnkGlySer :    40
         |||..!! !!:!|||||||||||||||||||||!!:|||||||||||||||   ||||||
         LeuSerAsnTyrArgGlyLysValLeuLeuIleIleAsnValAlaThrPhe***GlySer
 51339 : CTCAGTAACTACAGGGGTAAGGTGCTTCTCATCATCAATGTTGCCACCTTCTGAGGGTCA : 51280

    41 : ThrGln  >>>> Target Intron 1 >>>>  TyrHisArgMetAsnAlaLeuMetA :    51
         |||  !            120 bp           |||||||||:!!||||||||||||!
         ThrIle+-                         ++TyrHisArgLeuAsnAlaLeuMetG
 51279 : ACAATAga.........................agTACCACAGACTGAATGCACTTATGG : 51127

    52 : spMetTyrGlyGlyGlnArgPheThrValLeuGlyPheProCysAsnGlnPheGlyLeuG :    71
         !:|||!:!|||! !   ||||||||||||||||||||| !!|||||||||||||||||||
         luMetPheGlyAspIleArgPheThrValLeuGlyPheSerCysAsnGlnPheGlyLeuG
 51126 : AAATGTTTGGCGACATCAGATTTACTGTCCTTGGATTCTCCTGCAACCAATTCGGCCTTC : 51067

    72 : lnSerPro{G}  >>>> Target Intron 2 >>>>  {ly}GluAsnHisGluThrL :    80
         ||||||||{!}            715 bp           { !}! !|||||||||||||
         lnSerPro{G}++                         ++{lu}ValAsnHisGluThrL
 51066 : AGTCACCT{G}gt.........................ag{AG}GTGAATCATGAAACCC : 50325

    81 : euAsnValLeuGlnHisValArgProGlySerGlyPheLeuProLysPheProIlePheS :   100
         |||||:!!|||:!!:!!||||||||||||.!!||||||:!!||||||||||||||||||:
         euAsnIleLeuLysTyrValArgProGlyGlyGlyPheValProLysPheProIlePheA
 50324 : TTAATATTCTTAAGTATGTGAGACCTGGTGGAGGGTTTGTGCCAAAGTTTCCTATTTTCG : 50265

   101 : erArgIleGluValAsnGlySerAspGluAspProLeuTyrAlaTyrLeuLys  >>>>  :   118
         !!|||:!!||||||||||||! !:!!|||!!:||||||!:!.!!|||||||||       
         laArgValGluValAsnGlyLeuAsnGluGluProLeuPheThrTyrLeuLys++     
 50264 : CCAGAGTTGAAGTGAATGGATTAAATGAAGAGCCTCTTTTCACCTATCTAAAGgt..... : 50209

   119 : Target Intron 3 >>>>  GluSerLeuProPheValAsnProValIleGlyAspIl :   130
              80 bp            ||||||||||||||||||||||||||||||||||||||
                             ++GluSerLeuProPheValAsnProValIleGlyAspIl
 50208 : ....................agGAATCTTTGCCATTTGTGAATCCCGTAATTGGAGACAT : 50095

   131 : eArgLysLeuTyrTrpSerProIleLysAlaAsnAspValArgTrpAsnPheGluLysPh :   150
         |!:!|||!!!|||||||||||||||!!.!.!||||||:!!||||||||||||||||||||
         eLysLysPheTyrTrpSerProIleAsnValAsnAspIleArgTrpAsnPheGluLysPh
 50094 : AAAGAAATTCTACTGGTCTCCAATCAATGTCAATGACATCCGCTGGAATTTTGAGAAGTT : 50035

   151 : eLeuIleThrAlaAspGlyArgProTyrLysArg :   161
         |||||||||||||||||||! !|||!:!!:!|||
         eLeuIleThrAlaAspGlyMetProPheArgArg
 50034 : TCTAATAACCGCTGATGGCATGCCCTTCAGGAGG : 50000

vulgar: SPP00000623_2.0 0 161 . JXSJ01000009.1:subseq(4832795,101397) 51397 49999 - 597 M 42 126 5 0 2 I 0 116 3 0 2 M 31 93 S 0 1 5 0 2 I 0 711 3 0 2 S 1 2 M 43 129 5 0 2 I 0 76 3 0 2 M 44 132
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2016-11-16
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
JXSJ01000009.1:subseq(4832795,101397)	exonerate:protein2genome:local	gene	50000	51397	597	-	.	gene_id 1 ; sequence SPP00000623_2.0 ; gene_orientation +
JXSJ01000009.1:subseq(4832795,101397)	exonerate:protein2genome:local	cds	51272	51397	.	-	.	
JXSJ01000009.1:subseq(4832795,101397)	exonerate:protein2genome:local	exon	51272	51397	.	-	.	insertions 0 ; deletions 0
JXSJ01000009.1:subseq(4832795,101397)	exonerate:protein2genome:local	splice5	51270	51271	.	-	.	intron_id 1 ; splice_site "GA"
JXSJ01000009.1:subseq(4832795,101397)	exonerate:protein2genome:local	intron	51152	51271	.	-	.	intron_id 1
JXSJ01000009.1:subseq(4832795,101397)	exonerate:protein2genome:local	splice3	51152	51153	.	-	.	intron_id 0 ; splice_site "AG"
JXSJ01000009.1:subseq(4832795,101397)	exonerate:protein2genome:local	cds	51058	51151	.	-	.	
JXSJ01000009.1:subseq(4832795,101397)	exonerate:protein2genome:local	exon	51058	51151	.	-	.	insertions 0 ; deletions 0
JXSJ01000009.1:subseq(4832795,101397)	exonerate:protein2genome:local	splice5	51056	51057	.	-	.	intron_id 2 ; splice_site "GT"
JXSJ01000009.1:subseq(4832795,101397)	exonerate:protein2genome:local	intron	50343	51057	.	-	.	intron_id 2
JXSJ01000009.1:subseq(4832795,101397)	exonerate:protein2genome:local	splice3	50343	50344	.	-	.	intron_id 1 ; splice_site "AG"
JXSJ01000009.1:subseq(4832795,101397)	exonerate:protein2genome:local	cds	50212	50342	.	-	.	
JXSJ01000009.1:subseq(4832795,101397)	exonerate:protein2genome:local	exon	50212	50342	.	-	.	insertions 0 ; deletions 0
JXSJ01000009.1:subseq(4832795,101397)	exonerate:protein2genome:local	splice5	50210	50211	.	-	.	intron_id 3 ; splice_site "gt"
JXSJ01000009.1:subseq(4832795,101397)	exonerate:protein2genome:local	intron	50132	50211	.	-	.	intron_id 3
JXSJ01000009.1:subseq(4832795,101397)	exonerate:protein2genome:local	splice3	50132	50133	.	-	.	intron_id 2 ; splice_site "AG"
JXSJ01000009.1:subseq(4832795,101397)	exonerate:protein2genome:local	cds	50000	50131	.	-	.	
JXSJ01000009.1:subseq(4832795,101397)	exonerate:protein2genome:local	exon	50000	50131	.	-	.	insertions 0 ; deletions 0
JXSJ01000009.1:subseq(4832795,101397)	exonerate:protein2genome:local	similarity	50000	51397	597	-	.	alignment_id 1 ; Query SPP00000623_2.0 ; Align 51398 1 126 ; Align 51152 43 93 ; Align 50341 75 129 ; Align 50132 118 132
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis