TBLASTN 2.2.30+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: /export/cursos/20428/BI/genomes/2016/Miichthys_miiuy/genome.fa 6,294 sequences; 619,300,777 total letters Query= SPP00000623_2.0 # Protein # Glutathione peroxidase 3b (GPx3b) # Zebrafish Length=178 Score E Sequences producing significant alignments: (Bits) Value JXSJ01000009.1 Miichthys miiuy scaffold9, whole genome shotgun ... 87.8 1e-32 JXSJ01000043.1 Miichthys miiuy scaffold43, whole genome shotgun... 98.6 5e-22 JXSJ01000061.1 Miichthys miiuy scaffold61, whole genome shotgun... 98.6 6e-22 JXSJ01002762.1 Miichthys miiuy scaffold2762, whole genome shotg... 95.9 3e-21 JXSJ01005752.1 Miichthys miiuy scaffold5752, whole genome shotg... 91.7 7e-21 JXSJ01000122.1 Miichthys miiuy scaffold122, whole genome shotgu... 94.4 1e-20 JXSJ01000525.1 Miichthys miiuy scaffold525, whole genome shotgu... 62.4 5e-10 JXSJ01000010.1 Miichthys miiuy scaffold10, whole genome shotgun... 53.5 3e-07 JXSJ01000013.1 Miichthys miiuy scaffold13, whole genome shotgun... 52.8 5e-07 JXSJ01000006.1 Miichthys miiuy scaffold6, whole genome shotgun ... 41.2 0.003 > JXSJ01000009.1 Miichthys miiuy scaffold9, whole genome shotgun sequence Length=6752331 Score = 87.8 bits (216), Expect(2) = 1e-32, Method: Composition-based stats. Identities = 36/45 (80%), Positives = 41/45 (91%), Gaps = 0/45 (0%) Frame = -1 Query 117 KESLPFVNPVIGDIRKLYWSPIKANDVRWNFEKFLITADGRPYKR 161 +ESLPFVNPVIGDI+K YWSPI ND+RWNFEKFLITADG P++R Sbjct 4882929 QESLPFVNPVIGDIKKFYWSPINVNDIRWNFEKFLITADGMPFRR 4882795 Score = 73.2 bits (178), Expect(2) = 1e-32, Method: Compositional matrix adjust. Identities = 30/42 (71%), Positives = 39/42 (93%), Gaps = 0/42 (0%) Frame = -2 Query 76 NHETLNVLQHVRPGSGFLPKFPIFSRIEVNGSDEDPLYAYLK 117 NHETLN+L++VRPG GF+PKFPIF+R+EVNG +E+PL+ YLK Sbjct 4883132 NHETLNILKYVRPGGGFVPKFPIFARVEVNGLNEEPLFTYLK 4883007 Score = 92.4 bits (228), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 54/118 (46%), Positives = 63/118 (53%), Gaps = 40/118 (34%) Frame = -1 Query 1 MAANSVYDFTVETLEEKSVSLDIFRGKVLLIMNVATFXGST------------------- 41 MA S+YDF+ ETL+ + V L +RGKVLLI+NVATF GST Sbjct 4884192 MANKSIYDFSAETLDGQLVPLSNYRGKVLLIINVATF*GSTIEEVIFCKSSD*LQSFHII 4884013 Query 42 ---------------------QYHRMNALMDMYGGQRFTVLGFPCNQFGLQSPGENHE 78 QYHR+NALM+M+G RFTVLGF CNQFGLQSPG E Sbjct 4884012 S*HIICAVIFMKGI*FCVPFPQYHRLNALMEMFGDIRFTVLGFSCNQFGLQSPGRYTE 4883839 > JXSJ01000043.1 Miichthys miiuy scaffold43, whole genome shotgun sequence Length=2573463 Score = 98.6 bits (244), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 46/96 (48%), Positives = 63/96 (66%), Gaps = 4/96 (4%) Frame = -2 Query 71 QSPGENHETLNVLQHVRPGSGFLPKFPIFSRIEVNGSDEDPLYAYLKESLPFVN----PV 126 Q +N E LN L++VRPG+GF PKF I ++ VNG D PL+ +LK+ L F + + Sbjct 1231226 QENSKNEEILNSLKYVRPGNGFEPKFKILEKVNVNGKDAHPLFVFLKDKLRFPSDDAMAL 1231047 Query 127 IGDIRKLYWSPIKANDVRWNFEKFLITADGRPYKRY 162 + D + + WSP+ ND+ WNFEKFL+ DG PYKRY Sbjct 1231046 MNDPQCIIWSPVCRNDISWNFEKFLVGPDGEPYKRY 1230939 Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 28/67 (42%), Positives = 37/67 (55%), Gaps = 2/67 (3%) Frame = -3 Query 7 YDFTVETLEEKSVSLDIFRGKVLLIMNVATFXGSTQ--YHRMNALMDMYGGQRFTVLGFP 64 Y T + L + S +GKV+LI NVA+ G+T Y +MN L Y + +LG P Sbjct 1231870 YGLTAKLLSGELFSFSALKGKVVLIENVASL*GTTTRDYTQMNELHSRYAAKGLVILGVP 1231691 Query 65 CNQFGLQ 71 CNQFG Q Sbjct 1231690 CNQFGHQ 1231670 > JXSJ01000061.1 Miichthys miiuy scaffold61, whole genome shotgun sequence Length=1726861 Score = 98.6 bits (244), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 45/97 (46%), Positives = 62/97 (64%), Gaps = 4/97 (4%) Frame = +3 Query 70 LQSPGENHETLNVLQHVRPGSGFLPKFPIFSRIEVNGSDEDPLYAYLKESLPFVN----P 125 Q N E + LQHVRPG GF P F IF + +VNG++ P++AYLK+ LP+ + Sbjct 671691 FQENCSNGEIMKCLQHVRPGGGFQPNFTIFEKCDVNGTNTHPVFAYLKDKLPYPDDDPSS 671870 Query 126 VIGDIRKLYWSPIKANDVRWNFEKFLITADGRPYKRY 162 ++ D + L WSPI DV WNFEKF++ +G P+KRY Sbjct 671871 LMQDPKFLIWSPINRTDVSWNFEKFIVGPEGEPFKRY 671981 Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 34/71 (48%), Positives = 43/71 (61%), Gaps = 3/71 (4%) Frame = +3 Query 3 ANSVYDFTVETLEEKSVSLDIFRGKVLLIMNVATFXGST--QYHRMNALMDMYGGQRFTV 60 A + YD TLE SV ++FRG+V+LI NVA+ G+T + +N L Y R V Sbjct 670968 AKTFYDLRATTLEGDSVDFNVFRGRVVLIENVASL*GTTTRDFSELNQLQSKY-PHRLVV 671144 Query 61 LGFPCNQFGLQ 71 LGFPCNQFG Q Sbjct 671145 LGFPCNQFGYQ 671177 > JXSJ01002762.1 Miichthys miiuy scaffold2762, whole genome shotgun sequence Length=6586 Score = 95.9 bits (237), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 60/168 (36%), Positives = 89/168 (53%), Gaps = 19/168 (11%) Frame = -1 Query 4 NSVYDFTVETLEEKSVSLDIFRGKVLLIMNVATFXGST-QYHRMNALMDMYGGQRFTVLG 62 ++YD ++T+E S +L F+GKVLL++NVA+ G T QY + L + + VLG Sbjct 4504 QTIYDIPLKTIEGSSQTLADFQGKVLLVVNVASKCGLTPQYAGLEKLYEEHREAGLEVLG 4325 Query 63 FPCNQFGLQSPGENHE-----TLNVLQHVRPGSGFLPKFPIFSRIEVNGSDEDPLYAYLK 117 FP N F Q PG + E +LN + +FP+FS+I V G+D PLY L Sbjct 4324 FPANDFREQEPGSDEEIKAFCSLN----------YAVQFPLFSKIAVTGADRHPLYRLLT 4175 Query 118 ESLPFVN---PVIGDIRKLYWSPIKANDVRWNFEKFLITADGRPYKRY 162 E+ P P+ ++ P +V WNFEKFL++ DG+ R+ Sbjct 4174 EAQPQTTGEGPMRERLKGYGIEPGPLPEVLWNFEKFLVSRDGQVVARF 4031 > JXSJ01005752.1 Miichthys miiuy scaffold5752, whole genome shotgun sequence Length=1069 Score = 91.7 bits (226), Expect = 7e-21, Method: Compositional matrix adjust. Identities = 46/96 (48%), Positives = 62/96 (65%), Gaps = 4/96 (4%) Frame = +1 Query 71 QSPGENHETLNVLQHVRPGSGFLPKFPIFSRIEVNGSDEDPLYAYLKESLPFVN----PV 126 Q +N E L L++VRPG+GF PKF + +++VNG D L+ +L+ESLP + Sbjct 103 QENCKNEEILLSLKYVRPGNGFEPKFQLLEKVDVNGKDAHSLFVFLRESLPSPSDEPCAF 282 Query 127 IGDIRKLYWSPIKANDVRWNFEKFLITADGRPYKRY 162 I D + + WSP+ NDV WNFEKFLI DG P+KRY Sbjct 283 ITDPKLVIWSPVCRNDVAWNFEKFLIGPDGVPFKRY 390 > JXSJ01000122.1 Miichthys miiuy scaffold122, whole genome shotgun sequence Length=783778 Score = 94.4 bits (233), Expect = 1e-20, Method: Composition-based stats. Identities = 46/96 (48%), Positives = 62/96 (65%), Gaps = 4/96 (4%) Frame = -2 Query 71 QSPGENHETLNVLQHVRPGSGFLPKFPIFSRIEVNGSDEDPLYAYLKESLPFVN----PV 126 Q +N E L L++VRPG+GF PKF + +++VNG D L+ +L+ESLP + Sbjct 469341 QENCKNEEILLSLKYVRPGNGFEPKFQLLEKVDVNGKDAHSLFVFLRESLPSPSDEPCAF 469162 Query 127 IGDIRKLYWSPIKANDVRWNFEKFLITADGRPYKRY 162 I D + + WSP+ NDV WNFEKFLI DG P+KRY Sbjct 469161 ITDPKLVIWSPVCRNDVAWNFEKFLIGPDGVPFKRY 469054 Score = 57.8 bits (138), Expect = 1e-08, Method: Composition-based stats. Identities = 29/71 (41%), Positives = 40/71 (56%), Gaps = 2/71 (3%) Frame = -2 Query 3 ANSVYDFTVETLEEKSVSLDIFRGKVLLIMNVATFXGST--QYHRMNALMDMYGGQRFTV 60 A + YD L ++ + +GKV+LI NVA+ G+T Y +MN L D Y + + Sbjct 470580 ATTFYDLKANLLTGEAFNFSSLQGKVVLIENVASL*GTTTRDYTQMNELHDRYASKGLVI 470401 Query 61 LGFPCNQFGLQ 71 LG PCNQFG Q Sbjct 470400 LGVPCNQFGHQ 470368 > JXSJ01000525.1 Miichthys miiuy scaffold525, whole genome shotgun sequence Length=204830 Score = 62.4 bits (150), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 37/91 (41%), Positives = 51/91 (56%), Gaps = 7/91 (8%) Frame = +2 Query 28 VLLIMNVATFXGSTQYH--RMNALMDMYGGQRFTVLGFPCNQFGLQSPGENHETLNVLQH 85 V L++NVA+ G T+ H M L +G F VL FPCNQFG Q PG + E + ++ Sbjct 179948 VSLVVNVASECGFTEEHYKEMQQLQRDFGPYHFNVLAFPCNQFGQQEPGSDKEIDSFVRR 180127 Query 86 VRPGSGFLPKFPIFSRIEVNGSDEDPLYAYL 116 V S FP+FS+I V G+ + +Y YL Sbjct 180128 VYGVS-----FPLFSKIAVVGTGANNVYKYL 180205 > JXSJ01000010.1 Miichthys miiuy scaffold10, whole genome shotgun sequence Length=6703581 Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 24/78 (31%), Positives = 47/78 (60%), Gaps = 2/78 (3%) Frame = +3 Query 103 EVNGSDEDPLYAYLKESLPFVNPVIGD-IRKLYWSPIKANDVRWNFEKFLITADGRPYKR 161 ++ +D +++ + S P V G+ +L+W P+K +D++WNFEKFL+ DG+P R Sbjct 2820849 SLDSADYRSVFSATQNSCPPVGDNFGNPTNRLFWQPLKMSDIKWNFEKFLVGPDGKPVMR 2821028 Query 162 YYCETDMQH-KTNIELYL 178 ++ ++ +++I YL Sbjct 2821029 WHPSVNISEVRSDIRKYL 2821082 Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 18/36 (50%), Positives = 27/36 (75%), Gaps = 0/36 (0%) Frame = +1 Query 84 QHVRPGSGFLPKFPIFSRIEVNGSDEDPLYAYLKES 119 +HVRPG+GF+P F +F + +VNG DE ++ +LK S Sbjct 2820385 RHVRPGNGFVPNFLLFDKGDVNGKDEQEVFTFLKVS 2820492 Score = 43.1 bits (100), Expect = 8e-04, Method: Composition-based stats. Identities = 16/23 (70%), Positives = 18/23 (78%), Gaps = 0/23 (0%) Frame = +3 Query 58 FTVLGFPCNQFGLQSPGENHETL 80 T+LGFPCNQFG Q PG+ HE L Sbjct 2819760 LTILGFPCNQFGKQEPGQKHEIL 2819828 > JXSJ01000013.1 Miichthys miiuy scaffold13, whole genome shotgun sequence Length=5370402 Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 31/93 (33%), Positives = 45/93 (48%), Gaps = 7/93 (8%) Frame = -1 Query 26 GKVLLIMNVATFXGSTQ--YHRMNALMDMYGGQRFTVLGFPCNQFGLQSPGENHETLNVL 83 + L++NVA+ T+ Y M L G F VL FPC QFG G + + Sbjct 1302519 AQASLVVNVASHCEQTEANYRSMQELHRELGTSHFNVLAFPCGQFGDTETGTSRDIEAFA 1302340 Query 84 QHVRPGSGFLPKFPIFSRIEVNGSDEDPLYAYL 116 + S + FP FSRI++ GS+ DP + +L Sbjct 1302339 K-----STYGVTFPFFSRIKIMGSEADPAFRFL 1302256 > JXSJ01000006.1 Miichthys miiuy scaffold6, whole genome shotgun sequence Length=7996890 Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust. Identities = 21/49 (43%), Positives = 30/49 (61%), Gaps = 2/49 (4%) Frame = -3 Query 25 RGKVLLIMNVATFXGSTQ--YHRMNALMDMYGGQRFTVLGFPCNQFGLQ 71 RG V +I+NVA+ G T+ Y ++ + Y + +LGFPCNQFG Q Sbjct 3978784 RGDVCIIVNVASK*GKTRVNYTQLAGMHASYAEKGLRILGFPCNQFGGQ 3978638 Lambda K H a alpha 0.322 0.140 0.429 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 13371954050 Database: /export/cursos/20428/BI/genomes/2016/Miichthys_miiuy/genome.fa Posted date: Oct 21, 2016 4:44 PM Number of letters in database: 619,300,777 Number of sequences in database: 6,294 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 13 Window for multiple hits: 40