Command line: [exonerate -m p2g --showtargetgff -q gpx2_zf.aa.fa.canviat -t genomegpx2_JXSJ01000061.1.fa]
Hostname: [ws101097u]

C4 Alignment:
------------
         Query: SPP00000616_2.0 # Protein # Glutathione peroxidase 2 (GPx2) # Zebrafish 
        Target: JXSJ01000061.1:subseq(620956,101085) Miichthys miiuy scaffold61, whole genome shotgun sequence
         Model: protein2genome:local
     Raw score: 843
   Query range: 0 -> 189
  Target range: 49999 -> 51085

     1 : MetThrPheIleAlaLysThrPheTyrAspLeuHisAlaThrThrLeuGluGlyAspThr :    20
         |||||||||||||||||||||||||||||||||...|||||||||||||||||||||:!!
         MetThrPheIleAlaLysThrPheTyrAspLeuArgAlaThrThrLeuGluGlyAspSer
 50000 : ATGACGTTCATCGCCAAGACCTTCTACGACCTGAGGGCCACCACGCTGGAGGGAGACTCT : 50057

    21 : IleAspPheAsnIleTyrArgGlyArgValValLeuIleGluAsnValAlaSerLeuUnk :    40
         :!:|||||||||:!!!:!|||||||||||||||||||||||||||||||||||||||   
         ValAspPheAsnValPheArgGlyArgValValLeuIleGluAsnValAlaSerLeu***
 50058 : GTGGACTTTAATGTATTCAGGGGACGGGTGGTCCTGATAGAGAATGTGGCCTCGCTCTGA : 50117

    41 : GlyThrThrThrGlnAspTyrThrGlnLeuAsnGluLeuGlnSerArgTyrProHisArg :    60
         ||||||||||||!:!|||!:!!:!:!!||||||:!!|||||||||!:!||||||||||||
         GlyThrThrThrArgAspPheSerGluLeuAsnGlnLeuGlnSerLysTyrProHisArg
 50118 : GGCACCACCACCCGGGACTTCAGCGAGCTCAACCAGCTTCAGAGCAAGTACCCCCATCGG : 50177

    61 : LeuValValLeuGlyPheProCysAsnGlnPheGlyTyrGln  >>>> Target Intr :    75
         ||||||||||||||||||||||||||||||||||||||||||            519 bp
         LeuValValLeuGlyPheProCysAsnGlnPheGlyTyrGln++                
 50178 : CTGGTGGTCCTGGGTTTTCCCTGTAACCAGTTTGGATATCAGgt................ : 50224

    76 : on 1 >>>>  GluAsnCysSerAspGlyGluIleLeuAsnSerLeuLysTyrValArgP :    91
                    ||||||||||||:!!|||||||||:!!!!.!!!|||:!!:!!|||||||
                  ++GluAsnCysSerAsnGlyGluIleMetLysCysLeuGlnHisValArgP
 50225 : .........agGAGAATTGCTCCAATGGTGAGATCATGAAGTGCCTGCAGCATGTGCGTC : 50789

    92 : roGlyGluGlyTyrLysProSerPheThrIlePheGlnLysCysValValAsnGlySerA :   111
         |||||!  |||!:!:!!|||!:!||||||||||||:!!||||||! !|||||||||!!!:
         roGlyGlyGlyPheGlnProAsnPheThrIlePheGluLysCysAspValAsnGlyThrA
 50790 : CAGGTGGCGGCTTTCAGCCCAACTTTACCATCTTTGAGAAGTGTGACGTCAACGGAACAA : 50849

   112 : spAlaHisProValPheSerTyrLeuLysAspLysLeuProTyrProAspAspAspProV :   131
         !!.!!||||||||||||:!!||||||||||||||||||||||||||||||||||||||| 
         snThrHisProValPheAlaTyrLeuLysAspLysLeuProTyrProAspAspAspProS
 50850 : ACACGCATCCAGTCTTTGCATATCTTAAAGACAAGCTCCCCTATCCCGATGACGACCCCA : 50909

   132 : alThrLeuIleGlnAspProLysTyrLeuValTrpAsnProValSerArgAsnAspIleS :   151
          !:!!|||!!:||||||||||||!:!|||:!!|||!:!|||:!!!:!|||!..|||:!!|
         erSerLeuMetGlnAspProLysPheLeuIleTrpSerProIleAsnArgThrAspValS
 50910 : GCTCCCTCATGCAGGACCCCAAATTTCTGATCTGGAGTCCCATCAACAGGACGGACGTCT : 50969

   152 : erTrpAsnPheGluLysPheLeuIleGlyProGluGlyGluProPheLysArgTyrSerL :   171
         ||||||||||||||||||||:!!:!!||||||||||||||||||||||||||||||||||
         erTrpAsnPheGluLysPheIleValGlyProGluGlyGluProPheLysArgTyrSerL
 50970 : CTTGGAACTTTGAGAAATTCATCGTCGGGCCAGAGGGAGAGCCTTTTAAAAGATACAGCA : 51029

   172 : ysLysPheGlnThrIleAsnIleGluProAspIleGlnArgLeuLeuLysLeuThr :   189
         ||||||||!  ||||||:!!|||||||||||||||||||||||||||!:!||||||
         ysLysPheProThrIleAspIleGluProAspIleGlnArgLeuLeuArgLeuThr
 51030 : AAAAGTTCCCCACCATTGATATAGAGCCTGACATTCAAAGACTGTTAAGATTAACC : 51085

vulgar: SPP00000616_2.0 0 189 . JXSJ01000061.1:subseq(620956,101085) 49999 51085 + 843 M 74 222 5 0 2 I 0 515 3 0 2 M 115 345
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2016-11-16
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
JXSJ01000061.1:subseq(620956,101085)	exonerate:protein2genome:local	gene	50000	51085	843	+	.	gene_id 1 ; sequence SPP00000616_2.0 ; gene_orientation +
JXSJ01000061.1:subseq(620956,101085)	exonerate:protein2genome:local	cds	50000	50221	.	+	.	
JXSJ01000061.1:subseq(620956,101085)	exonerate:protein2genome:local	exon	50000	50221	.	+	.	insertions 0 ; deletions 0
JXSJ01000061.1:subseq(620956,101085)	exonerate:protein2genome:local	splice5	50222	50223	.	+	.	intron_id 1 ; splice_site "GT"
JXSJ01000061.1:subseq(620956,101085)	exonerate:protein2genome:local	intron	50222	50740	.	+	.	intron_id 1
JXSJ01000061.1:subseq(620956,101085)	exonerate:protein2genome:local	splice3	50739	50740	.	+	.	intron_id 0 ; splice_site "AG"
JXSJ01000061.1:subseq(620956,101085)	exonerate:protein2genome:local	cds	50741	51085	.	+	.	
JXSJ01000061.1:subseq(620956,101085)	exonerate:protein2genome:local	exon	50741	51085	.	+	.	insertions 0 ; deletions 0
JXSJ01000061.1:subseq(620956,101085)	exonerate:protein2genome:local	similarity	50000	51085	843	+	.	alignment_id 1 ; Query SPP00000616_2.0 ; Align 50000 1 222 ; Align 50741 75 345
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis