TBLASTN 2.2.30+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: /export/cursos/20428/BI/genomes/2016/Miichthys_miiuy/genome.fa 6,294 sequences; 619,300,777 total letters Query= SPP00000616_2.0 # Protein # Glutathione peroxidase 2 (GPx2) # Zebrafish Length=189 Score E Sequences producing significant alignments: (Bits) Value JXSJ01000061.1 Miichthys miiuy scaffold61, whole genome shotgun... 166 6e-45 JXSJ01000043.1 Miichthys miiuy scaffold43, whole genome shotgun... 143 4e-37 JXSJ01005752.1 Miichthys miiuy scaffold5752, whole genome shotg... 132 2e-35 JXSJ01000122.1 Miichthys miiuy scaffold122, whole genome shotgu... 132 1e-33 JXSJ01002762.1 Miichthys miiuy scaffold2762, whole genome shotg... 77.0 8e-15 JXSJ01000009.1 Miichthys miiuy scaffold9, whole genome shotgun ... 48.9 9e-13 JXSJ01000525.1 Miichthys miiuy scaffold525, whole genome shotgu... 59.3 4e-09 JXSJ01000014.1 Miichthys miiuy scaffold14, whole genome shotgun... 50.8 2e-06 JXSJ01000010.1 Miichthys miiuy scaffold10, whole genome shotgun... 50.8 3e-06 JXSJ01000006.1 Miichthys miiuy scaffold6, whole genome shotgun ... 50.4 3e-06 JXSJ01000013.1 Miichthys miiuy scaffold13, whole genome shotgun... 40.0 0.009 > JXSJ01000061.1 Miichthys miiuy scaffold61, whole genome shotgun sequence Length=1726861 Score = 166 bits (419), Expect = 6e-45, Method: Compositional matrix adjust. Identities = 85/117 (73%), Positives = 109/117 (93%), Gaps = 0/117 (0%) Frame = +3 Query 73 YQENCSDGEILNSLKYVRPGEGYKPSFTIFQKCVVNGSDAHPVFSylkdklpypdddpVT 132 +QENCS+GEI+ L++VRPG G++P+FTIF+KC VNG++ HPVF+YLKDKLPYPDDDP + Sbjct 671691 FQENCSNGEIMKCLQHVRPGGGFQPNFTIFEKCDVNGTNTHPVFAYLKDKLPYPDDDPSS 671870 Query 133 LIQDPKYLVWNPVSRNDISWNFEKFLIGPEGEPFKRYSKKFQTINIEPDIQRLLKLT 189 L+QDPK+L+W+P++R D+SWNFEKF++GPEGEPFKRYSKKF TI+IEPDIQRLL+LT Sbjct 671871 LMQDPKFLIWSPINRTDVSWNFEKFIVGPEGEPFKRYSKKFPTIDIEPDIQRLLRLT 672041 Score = 137 bits (346), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 62/74 (84%), Positives = 72/74 (97%), Gaps = 0/74 (0%) Frame = +3 Query 1 MTFIAKTFYDLHATTLEGDTIDFNIYRGRVVLIENVASLXGTTTQDYTQLNELQSRYPHR 60 MTFIAKTFYDL ATTLEGD++DFN++RGRVVLIENVASL GTTT+D+++LN+LQS+YPHR Sbjct 670956 MTFIAKTFYDLRATTLEGDSVDFNVFRGRVVLIENVASL*GTTTRDFSELNQLQSKYPHR 671135 Query 61 LVVLGFPCNQFGYQ 74 LVVLGFPCNQFGYQ Sbjct 671136 LVVLGFPCNQFGYQ 671177 > JXSJ01000043.1 Miichthys miiuy scaffold43, whole genome shotgun sequence Length=2573463 Score = 143 bits (360), Expect = 4e-37, Method: Compositional matrix adjust. Identities = 73/114 (64%), Positives = 93/114 (82%), Gaps = 0/114 (0%) Frame = -2 Query 74 QENCSDGEILNSLKYVRPGEGYKPSFTIFQKCVVNGSDAHPVFSylkdklpypdddpVTL 133 QEN + EILNSLKYVRPG G++P F I +K VNG DAHP+F +LKDKL +P DD + L Sbjct 1231226 QENSKNEEILNSLKYVRPGNGFEPKFKILEKVNVNGKDAHPLFVFLKDKLRFPSDDAMAL 1231047 Query 134 IQDPKYLVWNPVSRNDISWNFEKFLIGPEGEPFKRYSKKFQTINIEPDIQRLLK 187 + DP+ ++W+PV RNDISWNFEKFL+GP+GEP+KRYS+ F TI+IEPDI+ LL+ Sbjct 1231046 MNDPQCIIWSPVCRNDISWNFEKFLVGPDGEPYKRYSRNFLTIDIEPDIKELLE 1230885 Score = 91.3 bits (225), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 44/70 (63%), Positives = 53/70 (76%), Gaps = 1/70 (1%) Frame = -3 Query 6 KTFYDLHATTLEGDTIDFNIYRGRVVLIENVASLXGTTTQDYTQLNELQSRYPHR-LVVL 64 K FY L A L G+ F+ +G+VVLIENVASL GTTT+DYTQ+NEL SRY + LV+L Sbjct 1231879 KRFYGLTAKLLSGELFSFSALKGKVVLIENVASL*GTTTRDYTQMNELHSRYAAKGLVIL 1231700 Query 65 GFPCNQFGYQ 74 G PCNQFG+Q Sbjct 1231699 GVPCNQFGHQ 1231670 > JXSJ01005752.1 Miichthys miiuy scaffold5752, whole genome shotgun sequence Length=1069 Score = 132 bits (333), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 68/113 (60%), Positives = 88/113 (78%), Gaps = 0/113 (0%) Frame = +1 Query 74 QENCSDGEILNSLKYVRPGEGYKPSFTIFQKCVVNGSDAHPVFSylkdklpypdddpVTL 133 QENC + EIL SLKYVRPG G++P F + +K VNG DAH +F +L++ LP P D+P Sbjct 103 QENCKNEEILLSLKYVRPGNGFEPKFQLLEKVDVNGKDAHSLFVFLRESLPSPSDEPCAF 282 Query 134 IQDPKYLVWNPVSRNDISWNFEKFLIGPEGEPFKRYSKKFQTINIEPDIQRLL 186 I DPK ++W+PV RND++WNFEKFLIGP+G PFKRYS+KF T +IE DI++LL Sbjct 283 ITDPKLVIWSPVCRNDVAWNFEKFLIGPDGVPFKRYSRKFLTNDIEGDIKKLL 441 > JXSJ01000122.1 Miichthys miiuy scaffold122, whole genome shotgun sequence Length=783778 Score = 132 bits (333), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 68/113 (60%), Positives = 88/113 (78%), Gaps = 0/113 (0%) Frame = -2 Query 74 QENCSDGEILNSLKYVRPGEGYKPSFTIFQKCVVNGSDAHPVFSylkdklpypdddpVTL 133 QENC + EIL SLKYVRPG G++P F + +K VNG DAH +F +L++ LP P D+P Sbjct 469341 QENCKNEEILLSLKYVRPGNGFEPKFQLLEKVDVNGKDAHSLFVFLRESLPSPSDEPCAF 469162 Query 134 IQDPKYLVWNPVSRNDISWNFEKFLIGPEGEPFKRYSKKFQTINIEPDIQRLL 186 I DPK ++W+PV RND++WNFEKFLIGP+G PFKRYS+KF T +IE DI++LL Sbjct 469161 ITDPKLVIWSPVCRNDVAWNFEKFLIGPDGVPFKRYSRKFLTNDIEGDIKKLL 469003 Score = 95.1 bits (235), Expect = 9e-21, Method: Composition-based stats. Identities = 46/74 (62%), Positives = 57/74 (77%), Gaps = 1/74 (1%) Frame = -2 Query 2 TFIAKTFYDLHATTLEGDTIDFNIYRGRVVLIENVASLXGTTTQDYTQLNELQSRYPHR- 60 T +A TFYDL A L G+ +F+ +G+VVLIENVASL GTTT+DYTQ+NEL RY + Sbjct 470589 TRMATTFYDLKANLLTGEAFNFSSLQGKVVLIENVASL*GTTTRDYTQMNELHDRYASKG 470410 Query 61 LVVLGFPCNQFGYQ 74 LV+LG PCNQFG+Q Sbjct 470409 LVILGVPCNQFGHQ 470368 > JXSJ01002762.1 Miichthys miiuy scaffold2762, whole genome shotgun sequence Length=6586 Score = 77.0 bits (188), Expect = 8e-15, Method: Compositional matrix adjust. Identities = 63/189 (33%), Positives = 92/189 (49%), Gaps = 21/189 (11%) Frame = -1 Query 4 IAKTFYDLHATTLEGDTIDFNIYRGRVVLIENVASLXGTTTQDYTQLNELQSRYPHR--- 60 + +T YD+ T+EG + ++G+V+L+ NVAS G T Q Y L +L HR Sbjct 4510 MTQTIYDIPLKTIEGSSQTLADFQGKVLLVVNVASKCGLTPQ-YAGLEKLYEE--HREAG 4340 Query 61 LVVLGFPCNQFGYQENCSDGEI--LNSLKYVRPGEGYKPSFTIFQKCVVNGSDAHPVFSy 118 L VLGFP N F QE SD EI SL Y F +F K V G+D HP++ Sbjct 4339 LEVLGFPANDFREQEPGSDEEIKAFCSLNYAV-------QFPLFSKIAVTGADRHPLYRL 4181 Query 119 lkdklpypdddpVTLIQDPKYLVWNPVSRNDISWNFEKFLIGPEGEPFKRYSKKFQTINI 178 L + P + + Y + P ++ WNFEKFL+ +G+ R++ ++ Sbjct 4180 LTEAQPQTTGEGPMRERLKGYGI-EPGPLPEVLWNFEKFLVSRDGQVVARFAP-----DV 4019 Query 179 EPDIQRLLK 187 D RLL+ Sbjct 4018 AADDPRLLQ 3992 > JXSJ01000009.1 Miichthys miiuy scaffold9, whole genome shotgun sequence Length=6752331 Score = 48.9 bits (115), Expect(2) = 9e-13, Method: Composition-based stats. Identities = 20/36 (56%), Positives = 26/36 (72%), Gaps = 0/36 (0%) Frame = -1 Query 133 LIQDPKYLVWNPVSRNDISWNFEKFLIGPEGEPFKR 168 +I D K W+P++ NDI WNFEKFLI +G PF+R Sbjct 4882902 VIGDIKKFYWSPINVNDIRWNFEKFLITADGMPFRR 4882795 Score = 45.1 bits (105), Expect(2) = 9e-13, Method: Compositional matrix adjust. Identities = 20/37 (54%), Positives = 25/37 (68%), Gaps = 0/37 (0%) Frame = -2 Query 81 EILNSLKYVRPGEGYKPSFTIFQKCVVNGSDAHPVFS 117 E LN LKYVRPG G+ P F IF + VNG + P+F+ Sbjct 4883126 ETLNILKYVRPGGGFVPKFPIFARVEVNGLNEEPLFT 4883016 Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 33/108 (31%), Positives = 45/108 (42%), Gaps = 39/108 (36%) Frame = -1 Query 6 KTFYDLHATTLEGDTIDFNIYRGRVVLIENVASLXGTTTQD------------------- 46 K+ YD A TL+G + + YRG+V+LI NVA+ G+T ++ Sbjct 4884183 KSIYDFSAETLDGQLVPLSNYRGKVLLIINVATF*GSTIEEVIFCKSSD*LQSFHIIS*H 4884004 Query 47 -------------------YTQLNELQSRYPH-RLVVLGFPCNQFGYQ 74 Y +LN L + R VLGF CNQFG Q Sbjct 4884003 IICAVIFMKGI*FCVPFPQYHRLNALMEMFGDIRFTVLGFSCNQFGLQ 4883860 > JXSJ01000525.1 Miichthys miiuy scaffold525, whole genome shotgun sequence Length=204830 Score = 59.3 bits (142), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 37/88 (42%), Positives = 51/88 (58%), Gaps = 6/88 (7%) Frame = +2 Query 30 VVLIENVASLXGTTTQDYTQLNELQSRY-PHRLVVLGFPCNQFGYQENCSDGEILNSLKY 88 V L+ NVAS G T + Y ++ +LQ + P+ VL FPCNQFG QE SD EI + ++ Sbjct 179948 VSLVVNVASECGFTEEHYKEMQQLQRDFGPYHFNVLAFPCNQFGQQEPGSDKEIDSFVRR 180127 Query 89 VRPGEGYKPSFTIFQKCVVNGSDAHPVF 116 V Y SF +F K V G+ A+ V+ Sbjct 180128 V-----YGVSFPLFSKIAVVGTGANNVY 180196 > JXSJ01000014.1 Miichthys miiuy scaffold14, whole genome shotgun sequence Length=5141783 Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 26/50 (52%), Positives = 33/50 (66%), Gaps = 1/50 (2%) Frame = -1 Query 26 YRGRVVLIENVASLXGTTTQDYTQLNELQSRYPHR-LVVLGFPCNQFGYQ 74 +RG VV+I NVAS G T +Y+Q +L +RY R L +L FP NQFG Q Sbjct 8327 FRGSVVIITNVASK*GKTLVNYSQFADLHARYAERGLRILAFPSNQFGNQ 8178 > JXSJ01000010.1 Miichthys miiuy scaffold10, whole genome shotgun sequence Length=6703581 Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 23/50 (46%), Positives = 32/50 (64%), Gaps = 1/50 (2%) Frame = +3 Query 140 LVWNPVSRNDISWNFEKFLIGPEGEPFKRYSKKFQTINIEPDIQR-LLKL 188 L W P+ +DI WNFEKFL+GP+G+P R+ + DI++ LLKL Sbjct 2820942 LFWQPLKMSDIKWNFEKFLVGPDGKPVMRWHPSVNISEVRSDIRKYLLKL 2821091 Score = 38.1 bits (87), Expect = 0.049, Method: Composition-based stats. Identities = 18/30 (60%), Positives = 19/30 (63%), Gaps = 0/30 (0%) Frame = +3 Query 58 PHRLVVLGFPCNQFGYQENCSDGEILNSLK 87 P L +LGFPCNQFG QE EIL LK Sbjct 2819751 PLGLTILGFPCNQFGKQEPGQKHEILPGLK 2819840 > JXSJ01000006.1 Miichthys miiuy scaffold6, whole genome shotgun sequence Length=7996890 Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 26/49 (53%), Positives = 32/49 (65%), Gaps = 1/49 (2%) Frame = -3 Query 27 RGRVVLIENVASLXGTTTQDYTQLNELQSRYPHR-LVVLGFPCNQFGYQ 74 RG V +I NVAS G T +YTQL + + Y + L +LGFPCNQFG Q Sbjct 3978784 RGDVCIIVNVASK*GKTRVNYTQLAGMHASYAEKGLRILGFPCNQFGGQ 3978638 > JXSJ01000013.1 Miichthys miiuy scaffold13, whole genome shotgun sequence Length=5370402 Score = 40.0 bits (92), Expect = 0.009, Method: Compositional matrix adjust. Identities = 28/91 (31%), Positives = 38/91 (42%), Gaps = 6/91 (7%) Frame = -1 Query 27 RGRVVLIENVASLXGTTTQDYTQLNELQSRY-PHRLVVLGFPCNQFGYQENCSDGEILNS 85 + L+ NVAS T +Y + EL VL FPC QFG E + +I Sbjct 1302522 HAQASLVVNVASHCEQTEANYRSMQELHRELGTSHFNVLAFPCGQFGDTETGTSRDIEAF 1302343 Query 86 LKYVRPGEGYKPSFTIFQKCVVNGSDAHPVF 116 K Y +F F + + GS+A P F Sbjct 1302342 AKST-----YGVTFPFFSRIKIMGSEADPAF 1302265 Lambda K H a alpha 0.321 0.140 0.428 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 15428705700 Database: /export/cursos/20428/BI/genomes/2016/Miichthys_miiuy/genome.fa Posted date: Oct 21, 2016 4:44 PM Number of letters in database: 619,300,777 Number of sequences in database: 6,294 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 13 Window for multiple hits: 40