Command line: [exonerate -m p2g --showtargetgff -q gpx1b_zf.aa.fa.canviat -t genomegpx1b_JXSJ01000043.1.fa]
Hostname: [ws101097u]

C4 Alignment:
------------
         Query: SPP00000624_2.0 # Protein # Glutathione peroxidase 1b (GPx1b) # Zebrafish 
        Target: JXSJ01000043.1:subseq(1180876,101018) Miichthys miiuy scaffold43, whole genome shotgun sequence:[revcomp]
         Model: protein2genome:local
     Raw score: 810
   Query range: 0 -> 191
  Target range: 51018 -> 49999

     1 : MetAlaGlyThrMetLysLysPheTyrAspLeuSerAlaLysLeuLeuSerGlyAspLeu :    20
         |||||||||  !:!!|||!:!||||||!  |||!!!||||||||||||||||||!!:|||
         MetAlaGlyGlyValLysArgPheTyrGlyLeuThrAlaLysLeuLeuSerGlyGluLeu
 51018 : ATGGCTGGAGGCGTGAAAAGGTTTTACGGGCTGACAGCTAAACTGCTGTCTGGAGAATTG : 50961

    21 : LeuAsnPheSerSerLeuLysGlyLysValValLeuIleGluAsnValAlaSerLeuUnk :    40
         !!!!:!||||||:!!||||||||||||||||||||||||||||||||||||||||||   
         PheSerPheSerAlaLeuLysGlyLysValValLeuIleGluAsnValAlaSerLeu***
 50960 : TTCAGTTTCTCTGCACTGAAGGGGAAAGTTGTTCTCATTGAGAATGTCGCGTCTCTTTGA : 50901

    41 : GlyThrThrValArgAspTyrThrGlnMetAsnGluLeuHisSerArgTyrAlaAspGln :    60
         |||||||||..!||||||||||||||||||||||||||||||||||||||||||! !:!!
         GlyThrThrThrArgAspTyrThrGlnMetAsnGluLeuHisSerArgTyrAlaAlaLys
 50900 : GGAACAACAACCAGGGATTACACTCAGATGAACGAGCTACACAGTCGTTATGCGGCCAAG : 50841

    61 : GlyLeuValValLeuGlyAlaProCysAsnGlnPheGlyHisGln  >>>> Target I :    76
         |||||||||:!!||||||!.!||||||||||||||||||||||||            446
         GlyLeuValIleLeuGlyValProCysAsnGlnPheGlyHisGln++             
 50840 : GGACTCGTTATTCTGGGTGTTCCCTGTAATCAGTTTGGACATCAGgt............. : 50791

    77 : ntron 1 >>>>  GluAsnCysLysAsnGluGluIleLeuGlnSerLeuLysTyrValA :    91
          bp           |||||| !!||||||||||||||||||.!.||||||||||||||||
                     ++GluAsnSerLysAsnGluGluIleLeuAsnSerLeuLysTyrValA
 50790 : ............agGAGAACAGCAAGAATGAGGAAATCCTAAACTCTCTGAAGTATGTCC : 50302

    92 : rgProGlyAsnGlyPheGluProLysPheGlnIleLeuGluLysLeuGluValAsnGlyG :   111
         |||||||||||||||||||||||||||||:!!||||||||||||:!!.!.|||||||||:
         rgProGlyAsnGlyPheGluProLysPheLysIleLeuGluLysValAsnValAsnGlyL
 50301 : GTCCAGGGAATGGGTTTGAACCAAAGTTCAAGATCCTTGAGAAGGTGAATGTGAATGGAA : 50242

   112 : luAsnAlaHisProLeuPheAlaPheLeuLysGluLysLeuProGlnProSerAspAspP :   131
         !!:!!|||||||||||||||!.!|||||||||!!:||||||! !   |||||||||||| 
         ysAspAlaHisProLeuPheValPheLeuLysAspLysLeuArgPheProSerAspAspA
 50241 : AGGATGCCCACCCCTTATTTGTCTTTCTGAAGGACAAGCTTCGATTCCCTAGCGACGATG : 50182

   132 : roValSerLeuMetGlyAspProLysPheIleIleTrpSerProValCysArgAsnAspI :   151
         !!:!!:!!||||||..!||||||:!!! !|||||||||||||||||||||||||||||||
         laMetAlaLeuMetAsnAspProGlnCysIleIleTrpSerProValCysArgAsnAspI
 50181 : CCATGGCTCTCATGAATGATCCACAGTGCATCATTTGGAGTCCCGTCTGTAGGAACGACA : 50122

   152 : leSerTrpAsnPheGluLysPheLeuIleGlyProAspGlyGluProPheLysArgTyrS :   171
         ||||||||||||||||||||||||||:!!||||||||||||||||||!:!||||||||||
         leSerTrpAsnPheGluLysPheLeuValGlyProAspGlyGluProTyrLysArgTyrS
 50121 : TCTCCTGGAACTTCGAGAAGTTCCTGGTCGGTCCTGATGGCGAGCCCTATAAGCGCTACA : 50062

   172 : erArgArgPheLeuThrIleAspIleAspAlaAspIleLysGluLeuLeuLysArgThrL :   191
         |||||!.!||||||||||||||||||!!: !!||||||||||||||||||:!!|||! !|
         erArgAsnPheLeuThrIleAspIleGluProAspIleLysGluLeuLeuGluArgIleL
 50061 : GCAGAAATTTCCTCACCATTGACATTGAGCCAGATATTAAAGAGCTACTTGAGAGGATCA : 50002

   192 : ys :   191
         ||
         ys
 50001 : AA : 50000

vulgar: SPP00000624_2.0 0 191 . JXSJ01000043.1:subseq(1180876,101018) 51018 49999 - 810 M 75 225 5 0 2 I 0 442 3 0 2 M 116 348
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2016-11-16
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
JXSJ01000043.1:subseq(1180876,101018)	exonerate:protein2genome:local	gene	50000	51018	810	-	.	gene_id 1 ; sequence SPP00000624_2.0 ; gene_orientation +
JXSJ01000043.1:subseq(1180876,101018)	exonerate:protein2genome:local	cds	50794	51018	.	-	.	
JXSJ01000043.1:subseq(1180876,101018)	exonerate:protein2genome:local	exon	50794	51018	.	-	.	insertions 0 ; deletions 0
JXSJ01000043.1:subseq(1180876,101018)	exonerate:protein2genome:local	splice5	50792	50793	.	-	.	intron_id 1 ; splice_site "GT"
JXSJ01000043.1:subseq(1180876,101018)	exonerate:protein2genome:local	intron	50348	50793	.	-	.	intron_id 1
JXSJ01000043.1:subseq(1180876,101018)	exonerate:protein2genome:local	splice3	50348	50349	.	-	.	intron_id 0 ; splice_site "AG"
JXSJ01000043.1:subseq(1180876,101018)	exonerate:protein2genome:local	cds	50000	50347	.	-	.	
JXSJ01000043.1:subseq(1180876,101018)	exonerate:protein2genome:local	exon	50000	50347	.	-	.	insertions 0 ; deletions 0
JXSJ01000043.1:subseq(1180876,101018)	exonerate:protein2genome:local	similarity	50000	51018	810	-	.	alignment_id 1 ; Query SPP00000624_2.0 ; Align 51019 1 225 ; Align 50348 76 348
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis