TBLASTN 2.2.30+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: /export/cursos/20428/BI/genomes/2016/Miichthys_miiuy/genome.fa 6,294 sequences; 619,300,777 total letters Query= SPP00000624_2.0 # Protein # Glutathione peroxidase 1b (GPx1b) # Zebrafish Length=191 Score E Sequences producing significant alignments: (Bits) Value JXSJ01005752.1 Miichthys miiuy scaffold5752, whole genome shotg... 191 1e-57 JXSJ01000043.1 Miichthys miiuy scaffold43, whole genome shotgun... 196 1e-55 JXSJ01000122.1 Miichthys miiuy scaffold122, whole genome shotgu... 191 1e-53 JXSJ01000061.1 Miichthys miiuy scaffold61, whole genome shotgun... 176 2e-48 JXSJ01002762.1 Miichthys miiuy scaffold2762, whole genome shotg... 87.0 5e-18 JXSJ01000009.1 Miichthys miiuy scaffold9, whole genome shotgun ... 55.5 2e-17 JXSJ01000006.1 Miichthys miiuy scaffold6, whole genome shotgun ... 59.3 4e-09 JXSJ01000014.1 Miichthys miiuy scaffold14, whole genome shotgun... 58.9 6e-09 JXSJ01000010.1 Miichthys miiuy scaffold10, whole genome shotgun... 49.7 6e-06 JXSJ01000525.1 Miichthys miiuy scaffold525, whole genome shotgu... 47.8 3e-05 JXSJ01000013.1 Miichthys miiuy scaffold13, whole genome shotgun... 44.7 3e-04 > JXSJ01005752.1 Miichthys miiuy scaffold5752, whole genome shotgun sequence Length=1069 Score = 191 bits (485), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 86/116 (74%), Positives = 102/116 (88%), Gaps = 0/116 (0%) Frame = +1 Query 75 QENCKNEEILQSLKYVRPGNGFEPKFQILEKLEVNGENAHPLFAFLKEKLPQPSDDPVSL 134 QENCKNEEIL SLKYVRPGNGFEPKFQ+LEK++VNG++AH LF FL+E LP PSD+P + Sbjct 103 QENCKNEEILLSLKYVRPGNGFEPKFQLLEKVDVNGKDAHSLFVFLRESLPSPSDEPCAF 282 Query 135 MGDPKFIIWSPVCRNDISWNFEKFLIGPDGEPFKRYSRRFLTIDIDADIKELLKRT 190 + DPK +IWSPVCRND++WNFEKFLIGPDG PFKRYSR+FLT DI+ DIK+LL + Sbjct 283 ITDPKLVIWSPVCRNDVAWNFEKFLIGPDGVPFKRYSRKFLTNDIEGDIKKLLNQA 450 > JXSJ01000043.1 Miichthys miiuy scaffold43, whole genome shotgun sequence Length=2573463 Score = 196 bits (499), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 93/117 (79%), Positives = 105/117 (90%), Gaps = 0/117 (0%) Frame = -2 Query 75 QENCKNEEILQSLKYVRPGNGFEPKFQILEKLEVNGENAHPLFAFLKEKLPQPSDDPVSL 134 QEN KNEEIL SLKYVRPGNGFEPKF+ILEK+ VNG++AHPLF FLK+KL PSDD ++L Sbjct 1231226 QENSKNEEILNSLKYVRPGNGFEPKFKILEKVNVNGKDAHPLFVFLKDKLRFPSDDAMAL 1231047 Query 135 MGDPKFIIWSPVCRNDISWNFEKFLIGPDGEPFKRYSRRFLTIDIDADIKELLKRTK 191 M DP+ IIWSPVCRNDISWNFEKFL+GPDGEP+KRYSR FLTIDI+ DIKELL+R K Sbjct 1231046 MNDPQCIIWSPVCRNDISWNFEKFLVGPDGEPYKRYSRNFLTIDIEPDIKELLERIK 1230876 Score = 130 bits (326), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 60/75 (80%), Positives = 68/75 (91%), Gaps = 0/75 (0%) Frame = -3 Query 1 MAGTMKKFYDLSAKLLSGDLLNFSSLKGKVVLIENVASLXGTTVRDYTQMNELHSRYADQ 60 MAG +K+FY L+AKLLSG+L +FS+LKGKVVLIENVASL GTT RDYTQMNELHSRYA + Sbjct 1231894 MAGGVKRFYGLTAKLLSGELFSFSALKGKVVLIENVASL*GTTTRDYTQMNELHSRYAAK 1231715 Query 61 GLVVLGAPCNQFGHQ 75 GLV+LG PCNQFGHQ Sbjct 1231714 GLVILGVPCNQFGHQ 1231670 > JXSJ01000122.1 Miichthys miiuy scaffold122, whole genome shotgun sequence Length=783778 Score = 191 bits (485), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 86/116 (74%), Positives = 102/116 (88%), Gaps = 0/116 (0%) Frame = -2 Query 75 QENCKNEEILQSLKYVRPGNGFEPKFQILEKLEVNGENAHPLFAFLKEKLPQPSDDPVSL 134 QENCKNEEIL SLKYVRPGNGFEPKFQ+LEK++VNG++AH LF FL+E LP PSD+P + Sbjct 469341 QENCKNEEILLSLKYVRPGNGFEPKFQLLEKVDVNGKDAHSLFVFLRESLPSPSDEPCAF 469162 Query 135 MGDPKFIIWSPVCRNDISWNFEKFLIGPDGEPFKRYSRRFLTIDIDADIKELLKRT 190 + DPK +IWSPVCRND++WNFEKFLIGPDG PFKRYSR+FLT DI+ DIK+LL + Sbjct 469161 ITDPKLVIWSPVCRNDVAWNFEKFLIGPDGVPFKRYSRKFLTNDIEGDIKKLLNQA 468994 Score = 120 bits (300), Expect = 4e-29, Method: Composition-based stats. Identities = 54/68 (79%), Positives = 59/68 (87%), Gaps = 0/68 (0%) Frame = -2 Query 8 FYDLSAKLLSGDLLNFSSLKGKVVLIENVASLXGTTVRDYTQMNELHSRYADQGLVVLGA 67 FYDL A LL+G+ NFSSL+GKVVLIENVASL GTT RDYTQMNELH RYA +GLV+LG Sbjct 470571 FYDLKANLLTGEAFNFSSLQGKVVLIENVASL*GTTTRDYTQMNELHDRYASKGLVILGV 470392 Query 68 PCNQFGHQ 75 PCNQFGHQ Sbjct 470391 PCNQFGHQ 470368 > JXSJ01000061.1 Miichthys miiuy scaffold61, whole genome shotgun sequence Length=1726861 Score = 176 bits (445), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 77/117 (66%), Positives = 97/117 (83%), Gaps = 0/117 (0%) Frame = +3 Query 75 QENCKNEEILQSLKYVRPGNGFEPKFQILEKLEVNGENAHPLFAFLKEKLPQPSDDPVSL 134 QENC N EI++ L++VRPG GF+P F I EK +VNG N HP+FA+LK+KLP P DDP SL Sbjct 671694 QENCSNGEIMKCLQHVRPGGGFQPNFTIFEKCDVNGTNTHPVFAYLKDKLPYPDDDPSSL 671873 Query 135 MGDPKFIIWSPVCRNDISWNFEKFLIGPDGEPFKRYSRRFLTIDIDADIKELLKRTK 191 M DPKF+IWSP+ R D+SWNFEKF++GP+GEPFKRYS++F TIDI+ DI+ LL+ TK Sbjct 671874 MQDPKFLIWSPINRTDVSWNFEKFIVGPEGEPFKRYSKKFPTIDIEPDIQRLLRLTK 672044 Score = 89.4 bits (220), Expect = 8e-19, Method: Composition-based stats. Identities = 43/75 (57%), Positives = 56/75 (75%), Gaps = 1/75 (1%) Frame = +3 Query 1 MAGTMKKFYDLSAKLLSGDLLNFSSLKGKVVLIENVASLXGTTVRDYTQMNELHSRYADQ 60 M K FYDL A L GD ++F+ +G+VVLIENVASL GTT RD++++N+L S+Y + Sbjct 670956 MTFIAKTFYDLRATTLEGDSVDFNVFRGRVVLIENVASL*GTTTRDFSELNQLQSKYPHR 671135 Query 61 GLVVLGAPCNQFGHQ 75 LVVLG PCNQFG+Q Sbjct 671136 -LVVLGFPCNQFGYQ 671177 > JXSJ01002762.1 Miichthys miiuy scaffold2762, whole genome shotgun sequence Length=6586 Score = 87.0 bits (214), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 61/188 (32%), Positives = 91/188 (48%), Gaps = 16/188 (9%) Frame = -1 Query 3 GTMKKFYDLSAKLLSGDLLNFSSLKGKVVLIENVASLXGTTVRDYTQMNELHSRYADQGL 62 G + YD+ K + G + +GKV+L+ NVAS G T + Y + +L+ + + GL Sbjct 4513 GMTQTIYDIPLKTIEGSSQTLADFQGKVLLVVNVASKCGLTPQ-YAGLEKLYEEHREAGL 4337 Query 63 VVLGAPCNQFGHQENCKNEEI--LQSLKYVRPGNGFEPKFQILEKLEVNGENAHPLFAFL 120 VLG P N F QE +EEI SL Y +F + K+ V G + HPL+ L Sbjct 4336 EVLGFPANDFREQEPGSDEEIKAFCSLNYAV-------QFPLFSKIAVTGADRHPLYRLL 4178 Query 121 KEKLPQPSDDPVSLMGDPKFIIWSPVCRNDISWNFEKFLIGPDGEPFKRYSRRFLTIDID 180 E PQ + + + K P ++ WNFEKFL+ DG+ R++ D+ Sbjct 4177 TEAQPQTTGE-GPMRERLKGYGIEPGPLPEVLWNFEKFLVSRDGQVVARFAP-----DVA 4016 Query 181 ADIKELLK 188 AD LL+ Sbjct 4015 ADDPRLLQ 3992 > JXSJ01000009.1 Miichthys miiuy scaffold9, whole genome shotgun sequence Length=6752331 Score = 55.5 bits (132), Expect(2) = 2e-17, Method: Compositional matrix adjust. Identities = 26/42 (62%), Positives = 29/42 (69%), Gaps = 0/42 (0%) Frame = -2 Query 80 NEEILQSLKYVRPGNGFEPKFQILEKLEVNGENAHPLFAFLK 121 N E L LKYVRPG GF PKF I ++EVNG N PLF +LK Sbjct 4883132 NHETLNILKYVRPGGGFVPKFPIFARVEVNGLNEEPLFTYLK 4883007 Score = 54.3 bits (129), Expect(2) = 2e-17, Method: Composition-based stats. Identities = 27/47 (57%), Positives = 31/47 (66%), Gaps = 2/47 (4%) Frame = -1 Query 127 PSDDPVSLMGDPKFIIWSPVCRNDISWNFEKFLIGPDGEPFKRYSRR 173 P +PV +GD K WSP+ NDI WNFEKFLI DG PF+R S R Sbjct 4882917 PFVNPV--IGDIKKFYWSPINVNDIRWNFEKFLITADGMPFRR*SYR 4882783 Score = 47.8 bits (112), Expect = 3e-05, Method: Composition-based stats. Identities = 32/108 (30%), Positives = 44/108 (41%), Gaps = 38/108 (35%) Frame = -1 Query 6 KKFYDLSAKLLSGDLLNFSSLKGKVVLIENVASLXGTTVRD------------------- 46 K YD SA+ L G L+ S+ +GKV+LI NVA+ G+T+ + Sbjct 4884183 KSIYDFSAETLDGQLVPLSNYRGKVLLIINVATF*GSTIEEVIFCKSSD*LQSFHIIS*H 4884004 Query 47 -------------------YTQMNELHSRYADQGLVVLGAPCNQFGHQ 75 Y ++N L + D VLG CNQFG Q Sbjct 4884003 IICAVIFMKGI*FCVPFPQYHRLNALMEMFGDIRFTVLGFSCNQFGLQ 4883860 > JXSJ01000006.1 Miichthys miiuy scaffold6, whole genome shotgun sequence Length=7996890 Score = 59.3 bits (142), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 28/54 (52%), Positives = 37/54 (69%), Gaps = 0/54 (0%) Frame = -3 Query 22 NFSSLKGKVVLIENVASLXGTTVRDYTQMNELHSRYADQGLVVLGAPCNQFGHQ 75 F S +G V +I NVAS G T +YTQ+ +H+ YA++GL +LG PCNQFG Q Sbjct 3978799 GFFSARGDVCIIVNVASK*GKTRVNYTQLAGMHASYAEKGLRILGFPCNQFGGQ 3978638 > JXSJ01000014.1 Miichthys miiuy scaffold14, whole genome shotgun sequence Length=5141783 Score = 58.9 bits (141), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 26/50 (52%), Positives = 37/50 (74%), Gaps = 0/50 (0%) Frame = -1 Query 26 LKGKVVLIENVASLXGTTVRDYTQMNELHSRYADQGLVVLGAPCNQFGHQ 75 +G VV+I NVAS G T+ +Y+Q +LH+RYA++GL +L P NQFG+Q Sbjct 8327 FRGSVVIITNVASK*GKTLVNYSQFADLHARYAERGLRILAFPSNQFGNQ 8178 > JXSJ01000010.1 Miichthys miiuy scaffold10, whole genome shotgun sequence Length=6703581 Score = 49.7 bits (117), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 20/47 (43%), Positives = 31/47 (66%), Gaps = 0/47 (0%) Frame = +3 Query 141 IIWSPVCRNDISWNFEKFLIGPDGEPFKRYSRRFLTIDIDADIKELL 187 + W P+ +DI WNFEKFL+GPDG+P R+ ++ +DI++ L Sbjct 2820942 LFWQPLKMSDIKWNFEKFLVGPDGKPVMRWHPSVNISEVRSDIRKYL 2821082 Score = 40.8 bits (94), Expect = 0.005, Method: Compositional matrix adjust. Identities = 17/34 (50%), Positives = 25/34 (74%), Gaps = 0/34 (0%) Frame = +1 Query 88 KYVRPGNGFEPKFQILEKLEVNGENAHPLFAFLK 121 ++VRPGNGF P F + +K +VNG++ +F FLK Sbjct 2820385 RHVRPGNGFVPNFLLFDKGDVNGKDEQEVFTFLK 2820486 > JXSJ01000525.1 Miichthys miiuy scaffold525, whole genome shotgun sequence Length=204830 Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 30/91 (33%), Positives = 45/91 (49%), Gaps = 5/91 (5%) Frame = +2 Query 30 VVLIENVASLXGTTVRDYTQMNELHSRYADQGLVVLGAPCNQFGHQENCKNEEILQSLKY 89 V L+ NVAS G T Y +M +L + VL PCNQFG QE ++EI ++ Sbjct 179948 VSLVVNVASECGFTEEHYKEMQQLQRDFGPYHFNVLAFPCNQFGQQEPGSDKEIDSFVRR 180127 Query 90 VRPGNGFEPKFQILEKLEVNGENAHPLFAFL 120 V + F + K+ V G A+ ++ +L Sbjct 180128 V-----YGVSFPLFSKIAVVGTGANNVYKYL 180205 > JXSJ01000013.1 Miichthys miiuy scaffold13, whole genome shotgun sequence Length=5370402 Score = 44.7 bits (104), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 28/93 (30%), Positives = 39/93 (42%), Gaps = 5/93 (5%) Frame = -1 Query 28 GKVVLIENVASLXGTTVRDYTQMNELHSRYADQGLVVLGAPCNQFGHQENCKNEEILQSL 87 + L+ NVAS T +Y M ELH VL PC QFG E + +I Sbjct 1302519 AQASLVVNVASHCEQTEANYRSMQELHRELGTSHFNVLAFPCGQFGDTETGTSRDIEAFA 1302340 Query 88 KYVRPGNGFEPKFQILEKLEVNGENAHPLFAFL 120 K + + F ++++ G A P F FL Sbjct 1302339 K-----STYGVTFPFFSRIKIMGSEADPAFRFL 1302256 Lambda K H a alpha 0.319 0.139 0.416 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 15840137852 Database: /export/cursos/20428/BI/genomes/2016/Miichthys_miiuy/genome.fa Posted date: Oct 21, 2016 4:44 PM Number of letters in database: 619,300,777 Number of sequences in database: 6,294 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 13 Window for multiple hits: 40