Command line: [exonerate -m p2g --showtargetgff -q gpx1a_zf.aa.fa.canviat -t genomegpx1a_JXSJ01000122.1.fa]
Hostname: [ws101097u]

C4 Alignment:
------------
         Query: SPP00000621_2.0 # Protein # Glutathione peroxidase 1a (GPx1a) # Zebrafish 
        Target: JXSJ01000122.1:subseq(419000,101574) Miichthys miiuy scaffold122, whole genome shotgun sequence:[revcomp]
         Model: protein2genome:local
     Raw score: 794
   Query range: 5 -> 187
  Target range: 51574 -> 49999

     6 : SerPheTyrAspIleThrAlaLysThrLeuThrGlyGluGluPheLysPheSerSerLeu :    25
         !!!|||||||||:!!! !|||!!.  !||||||||||||! !|||!!.||||||||||||
         ThrPheTyrAspLeuLysAlaAsnLeuLeuThrGlyGluAlaPheAsnPheSerSerLeu
 51574 : ACATTTTACGACCTCAAGGCCAACCTCTTAACAGGAGAAGCGTTTAATTTCTCGTCCCTG : 51517

    26 : GlnGlyLysValValLeuIleGluAsnValAlaSerLeuUnkGlyThrThrSerArgAsp :    45
         |||||||||||||||||||||||||||||||||||||||   |||||||||!!!||||||
         GlnGlyLysValValLeuIleGluAsnValAlaSerLeu***GlyThrThrThrArgAsp
 51516 : CAGGGAAAAGTTGTCCTCATTGAGAATGTCGCGTCTCTCTGAGGTACGACCACCAGGGAT : 51457

    46 : TyrThrGlnMetAsnGluLeuHisGluArgPheAlaGluLysGlyLeuValValLeuGly :    65
         ||||||||||||||||||||||||!!:|||!:!|||...||||||||||||:!!||||||
         TyrThrGlnMetAsnGluLeuHisAspArgTyrAlaSerLysGlyLeuValIleLeuGly
 51456 : TACACCCAGATGAACGAGCTCCATGACCGCTATGCCAGTAAGGGGCTCGTTATCCTGGGA : 51397

    66 : ValProCysAsnGlnPheGlyTyrGln  >>>> Target Intron 1 >>>>  GluA :    76
         |||||||||||||||||||||:!!|||           1029 bp           ||||
         ValProCysAsnGlnPheGlyHisGln++                         ++GluA
 51396 : GTGCCCTGCAACCAGTTCGGCCATCAGgt.........................agGAGA : 50335

    77 : snCysThrAsnGluGluIleLeuLeuSerLeuLysTyrValArgProGlyAsnGlyTyrG :    96
         |||||! !||||||||||||||||||||||||||||||||||||||||||||||||!:!|
         snCysLysAsnGluGluIleLeuLeuSerLeuLysTyrValArgProGlyAsnGlyPheG
 50334 : ACTGTAAGAATGAAGAAATCCTCTTGTCTCTGAAGTACGTCCGTCCTGGAAATGGCTTTG : 50275

    97 : luProLysPheGlnLeuLeuGluLysValAspValAsnGlyLysAsnAlaHisProLeuP :   116
         ||||||||||||||||||||||||||||||||||||||||||||:!!|||||| !!||||
         luProLysPheGlnLeuLeuGluLysValAspValAsnGlyLysAspAlaHisSerLeuP
 50274 : AGCCAAAGTTTCAGCTCCTGGAGAAGGTGGATGTGAATGGAAAGGATGCCCATTCCCTGT : 50215

   117 : heThrPheLeuLysGluLysLeuProPheProSerAspGluProMetProPheMetSerA :   136
         ||..!||||||!:!|||!..||||||! !|||||||||||||||    !!|||!!:!!!|
         heValPheLeuArgGluSerLeuProSerProSerAspGluProCysAlaPheIleThrA
 50214 : TTGTGTTCCTGAGAGAAAGTCTCCCATCCCCCAGCGACGAGCCGTGCGCCTTCATTACTG : 50155

   137 : spProLysPheIleIleTrpSerProValCysArgAsnAspIleAlaTrpAsnPheGluL :   156
         ||||||||!!.:!!|||||||||||||||||||||||||||:!:||||||||||||||||
         spProLysLeuValIleTrpSerProValCysArgAsnAspValAlaTrpAsnPheGluL
 50154 : ACCCCAAGTTAGTCATCTGGAGCCCGGTCTGCAGGAACGATGTGGCGTGGAACTTTGAGA : 50095

   157 : ysPheLeuIleGlySerAspGlyValProPheLysArgTyrSerArgArgPheLeuThrS :   176
         |||||||||||||| !!||||||||||||||||||||||||||||||!:!|||||||||!
         ysPheLeuIleGlyProAspGlyValProPheLysArgTyrSerArgLysPheLeuThrA
 50094 : AGTTCCTCATCGGGCCCGATGGGGTTCCCTTCAAGCGTTACAGCAGGAAGTTCCTCACCA : 50035

   177 : erGlyIleAspGlyAspIleLysLysLeuLeuSer :   187
         :!! !|||!!:|||||||||||||||||||||!:!
         snAspIleGluGlyAspIleLysLysLeuLeuAsn
 50034 : ATGACATCGAGGGAGACATCAAGAAGCTCCTCAAC : 50000

vulgar: SPP00000621_2.0 5 187 . JXSJ01000122.1:subseq(419000,101574) 51574 49999 - 794 M 69 207 5 0 2 I 0 1025 3 0 2 M 113 339
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2016-11-16
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
JXSJ01000122.1:subseq(419000,101574)	exonerate:protein2genome:local	gene	50000	51574	794	-	.	gene_id 1 ; sequence SPP00000621_2.0 ; gene_orientation +
JXSJ01000122.1:subseq(419000,101574)	exonerate:protein2genome:local	cds	51368	51574	.	-	.	
JXSJ01000122.1:subseq(419000,101574)	exonerate:protein2genome:local	exon	51368	51574	.	-	.	insertions 0 ; deletions 0
JXSJ01000122.1:subseq(419000,101574)	exonerate:protein2genome:local	splice5	51366	51367	.	-	.	intron_id 1 ; splice_site "GT"
JXSJ01000122.1:subseq(419000,101574)	exonerate:protein2genome:local	intron	50339	51367	.	-	.	intron_id 1
JXSJ01000122.1:subseq(419000,101574)	exonerate:protein2genome:local	splice3	50339	50340	.	-	.	intron_id 0 ; splice_site "AG"
JXSJ01000122.1:subseq(419000,101574)	exonerate:protein2genome:local	cds	50000	50338	.	-	.	
JXSJ01000122.1:subseq(419000,101574)	exonerate:protein2genome:local	exon	50000	50338	.	-	.	insertions 0 ; deletions 0
JXSJ01000122.1:subseq(419000,101574)	exonerate:protein2genome:local	similarity	50000	51574	794	-	.	alignment_id 1 ; Query SPP00000621_2.0 ; Align 51575 6 207 ; Align 50339 75 339
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis