TBLASTN 2.2.30+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: /export/cursos/20428/BI/genomes/2016/Miichthys_miiuy/genome.fa 6,294 sequences; 619,300,777 total letters Query= SPP00000621_2.0 # Protein # Glutathione peroxidase 1a (GPx1a) # Zebrafish Length=190 Score E Sequences producing significant alignments: (Bits) Value JXSJ01005752.1 Miichthys miiuy scaffold5752, whole genome shotg... 201 1e-61 JXSJ01000122.1 Miichthys miiuy scaffold122, whole genome shotgu... 201 3e-57 JXSJ01000043.1 Miichthys miiuy scaffold43, whole genome shotgun... 179 2e-49 JXSJ01000061.1 Miichthys miiuy scaffold61, whole genome shotgun... 157 4e-42 JXSJ01002762.1 Miichthys miiuy scaffold2762, whole genome shotg... 94.4 2e-20 JXSJ01000006.1 Miichthys miiuy scaffold6, whole genome shotgun ... 60.1 3e-09 JXSJ01000009.1 Miichthys miiuy scaffold9, whole genome shotgun ... 58.2 1e-08 JXSJ01000014.1 Miichthys miiuy scaffold14, whole genome shotgun... 55.8 6e-08 JXSJ01000525.1 Miichthys miiuy scaffold525, whole genome shotgu... 52.4 8e-07 JXSJ01000013.1 Miichthys miiuy scaffold13, whole genome shotgun... 50.4 3e-06 JXSJ01000010.1 Miichthys miiuy scaffold10, whole genome shotgun... 47.8 3e-05 > JXSJ01005752.1 Miichthys miiuy scaffold5752, whole genome shotgun sequence Length=1069 Score = 201 bits (511), Expect = 1e-61, Method: Compositional matrix adjust. Identities = 93/114 (82%), Positives = 104/114 (91%), Gaps = 0/114 (0%) Frame = +1 Query 74 QENCTNEEILLSLKYVRPGNGYEPKFQLLEKVDVNGKNAHPLFTFLKEKLPFPSDEPMPF 133 QENC NEEILLSLKYVRPGNG+EPKFQLLEKVDVNGK+AH LF FL+E LP PSDEP F Sbjct 103 QENCKNEEILLSLKYVRPGNGFEPKFQLLEKVDVNGKDAHSLFVFLRESLPSPSDEPCAF 282 Query 134 MSDPKFIIWSPVCRNDIAWNFEKFLIGSDGVPFKRYSRRFLTSGIDGDIKKLLS 187 ++DPK +IWSPVCRND+AWNFEKFLIG DGVPFKRYSR+FLT+ I+GDIKKLL+ Sbjct 283 ITDPKLVIWSPVCRNDVAWNFEKFLIGPDGVPFKRYSRKFLTNDIEGDIKKLLN 444 > JXSJ01000122.1 Miichthys miiuy scaffold122, whole genome shotgun sequence Length=783778 Score = 201 bits (511), Expect = 3e-57, Method: Compositional matrix adjust. Identities = 93/114 (82%), Positives = 104/114 (91%), Gaps = 0/114 (0%) Frame = -2 Query 74 QENCTNEEILLSLKYVRPGNGYEPKFQLLEKVDVNGKNAHPLFTFLKEKLPFPSDEPMPF 133 QENC NEEILLSLKYVRPGNG+EPKFQLLEKVDVNGK+AH LF FL+E LP PSDEP F Sbjct 469341 QENCKNEEILLSLKYVRPGNGFEPKFQLLEKVDVNGKDAHSLFVFLRESLPSPSDEPCAF 469162 Query 134 MSDPKFIIWSPVCRNDIAWNFEKFLIGSDGVPFKRYSRRFLTSGIDGDIKKLLS 187 ++DPK +IWSPVCRND+AWNFEKFLIG DGVPFKRYSR+FLT+ I+GDIKKLL+ Sbjct 469161 ITDPKLVIWSPVCRNDVAWNFEKFLIGPDGVPFKRYSRKFLTNDIEGDIKKLLN 469000 Score = 122 bits (306), Expect = 5e-30, Method: Composition-based stats. Identities = 55/69 (80%), Positives = 62/69 (90%), Gaps = 0/69 (0%) Frame = -2 Query 6 SFYDITAKTLTGEEFKFSSLQGKVVLIENVASLXGTTSRDYTQMNELHERFAEKGLVVLG 65 +FYD+ A LTGE F FSSLQGKVVLIENVASL GTT+RDYTQMNELH+R+A KGLV+LG Sbjct 470574 TFYDLKANLLTGEAFNFSSLQGKVVLIENVASL*GTTTRDYTQMNELHDRYASKGLVILG 470395 Query 66 VPCNQFGYQ 74 VPCNQFG+Q Sbjct 470394 VPCNQFGHQ 470368 > JXSJ01000043.1 Miichthys miiuy scaffold43, whole genome shotgun sequence Length=2573463 Score = 179 bits (453), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 84/113 (74%), Positives = 98/113 (87%), Gaps = 0/113 (0%) Frame = -2 Query 74 QENCTNEEILLSLKYVRPGNGYEPKFQLLEKVDVNGKNAHPLFTFLKEKLPFPSDEPMPF 133 QEN NEEIL SLKYVRPGNG+EPKF++LEKV+VNGK+AHPLF FLK+KL FPSD+ M Sbjct 1231226 QENSKNEEILNSLKYVRPGNGFEPKFKILEKVNVNGKDAHPLFVFLKDKLRFPSDDAMAL 1231047 Query 134 MSDPKFIIWSPVCRNDIAWNFEKFLIGSDGVPFKRYSRRFLTSGIDGDIKKLL 186 M+DP+ IIWSPVCRNDI+WNFEKFL+G DG P+KRYSR FLT I+ DIK+LL Sbjct 1231046 MNDPQCIIWSPVCRNDISWNFEKFLVGPDGEPYKRYSRNFLTIDIEPDIKELL 1230888 Score = 120 bits (302), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 55/73 (75%), Positives = 64/73 (88%), Gaps = 0/73 (0%) Frame = -3 Query 2 AGIKSFYDITAKTLTGEEFKFSSLQGKVVLIENVASLXGTTSRDYTQMNELHERFAEKGL 61 G+K FY +TAK L+GE F FS+L+GKVVLIENVASL GTT+RDYTQMNELH R+A KGL Sbjct 1231888 GGVKRFYGLTAKLLSGELFSFSALKGKVVLIENVASL*GTTTRDYTQMNELHSRYAAKGL 1231709 Query 62 VVLGVPCNQFGYQ 74 V+LGVPCNQFG+Q Sbjct 1231708 VILGVPCNQFGHQ 1231670 > JXSJ01000061.1 Miichthys miiuy scaffold61, whole genome shotgun sequence Length=1726861 Score = 157 bits (398), Expect = 4e-42, Method: Compositional matrix adjust. Identities = 67/122 (55%), Positives = 93/122 (76%), Gaps = 0/122 (0%) Frame = +3 Query 69 NQFGYQENCTNEEILLSLKYVRPGNGYEPKFQLLEKVDVNGKNAHPLFTFLKEKLPFPSD 128 N +QENC+N EI+ L++VRPG G++P F + EK DVNG N HP+F +LK+KLP+P D Sbjct 671679 NTCVFQENCSNGEIMKCLQHVRPGGGFQPNFTIFEKCDVNGTNTHPVFAYLKDKLPYPDD 671858 Query 129 EPMPFMSDPKFIIWSPVCRNDIAWNFEKFLIGSDGVPFKRYSRRFLTSGIDGDIKKLLSI 188 +P M DPKF+IWSP+ R D++WNFEKF++G +G PFKRYS++F T I+ DI++LL + Sbjct 671859 DPSSLMQDPKFLIWSPINRTDVSWNFEKFIVGPEGEPFKRYSKKFPTIDIEPDIQRLLRL 672038 Query 189 PK 190 K Sbjct 672039 TK 672044 Score = 88.2 bits (217), Expect = 2e-18, Method: Composition-based stats. Identities = 40/70 (57%), Positives = 55/70 (79%), Gaps = 1/70 (1%) Frame = +3 Query 5 KSFYDITAKTLTGEEFKFSSLQGKVVLIENVASLXGTTSRDYTQMNELHERFAEKGLVVL 64 K+FYD+ A TL G+ F+ +G+VVLIENVASL GTT+RD++++N+L ++ + LVVL Sbjct 670971 KTFYDLRATTLEGDSVDFNVFRGRVVLIENVASL*GTTTRDFSELNQLQSKYPHR-LVVL 671147 Query 65 GVPCNQFGYQ 74 G PCNQFGYQ Sbjct 671148 GFPCNQFGYQ 671177 > JXSJ01002762.1 Miichthys miiuy scaffold2762, whole genome shotgun sequence Length=6586 Score = 94.4 bits (233), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 62/168 (37%), Positives = 84/168 (50%), Gaps = 11/168 (7%) Frame = -1 Query 5 KSFYDITAKTLTGEEFKFSSLQGKVVLIENVASLXGTTSRDYTQMNELHERFAEKGLVVL 64 ++ YDI KT+ G + QGKV+L+ NVAS G T + Y + +L+E E GL VL Sbjct 4504 QTIYDIPLKTIEGSSQTLADFQGKVLLVVNVASKCGLTPQ-YAGLEKLYEEHREAGLEVL 4328 Query 65 GVPCNQFGYQENCTNEEI--LLSLKYVRPGNGYEPKFQLLEKVDVNGKNAHPLFTFLKEK 122 G P N F QE ++EEI SL Y +F L K+ V G + HPL+ L E Sbjct 4327 GFPANDFREQEPGSDEEIKAFCSLNYAV-------QFPLFSKIAVTGADRHPLYRLLTEA 4169 Query 123 LPFPSDEPMPFMSDPKFIIWSPVCRNDIAWNFEKFLIGSDGVPFKRYS 170 P + E P K P ++ WNFEKFL+ DG R++ Sbjct 4168 QPQTTGE-GPMRERLKGYGIEPGPLPEVLWNFEKFLVSRDGQVVARFA 4028 > JXSJ01000006.1 Miichthys miiuy scaffold6, whole genome shotgun sequence Length=7996890 Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 29/53 (55%), Positives = 36/53 (68%), Gaps = 0/53 (0%) Frame = -3 Query 22 FSSLQGKVVLIENVASLXGTTSRDYTQMNELHERFAEKGLVVLGVPCNQFGYQ 74 F S +G V +I NVAS G T +YTQ+ +H +AEKGL +LG PCNQFG Q Sbjct 3978796 FFSARGDVCIIVNVASK*GKTRVNYTQLAGMHASYAEKGLRILGFPCNQFGGQ 3978638 Score = 39.7 bits (91), Expect = 0.014, Method: Compositional matrix adjust. Identities = 15/29 (52%), Positives = 21/29 (72%), Gaps = 0/29 (0%) Frame = -1 Query 94 GYEPKFQLLEKVDVNGKNAHPLFTFLKEK 122 GY +F L K+DVNG NAHPL+ ++K + Sbjct 3978318 GYNAEFDLFSKIDVNGDNAHPLWKWMKAQ 3978232 > JXSJ01000009.1 Miichthys miiuy scaffold9, whole genome shotgun sequence Length=6752331 Score = 58.2 bits (139), Expect = 1e-08, Method: Composition-based stats. Identities = 31/71 (44%), Positives = 43/71 (61%), Gaps = 8/71 (11%) Frame = -1 Query 106 DVNGKNAHPLFTFL----KEKLPFPSDEPMPFMSDPKFIIWSPVCRNDIAWNFEKFLIGS 161 D++ +A +F + +E LPF + P + D K WSP+ NDI WNFEKFLI + Sbjct 4882983 DISAVSAADVFIVISHSPQESLPFVN----PVIGDIKKFYWSPINVNDIRWNFEKFLITA 4882816 Query 162 DGVPFKRYSRR 172 DG+PF+R S R Sbjct 4882815 DGMPFRR*SYR 4882783 Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 25/43 (58%), Positives = 30/43 (70%), Gaps = 0/43 (0%) Frame = -2 Query 78 TNEEILLSLKYVRPGNGYEPKFQLLEKVDVNGKNAHPLFTFLK 120 N E L LKYVRPG G+ PKF + +V+VNG N PLFT+LK Sbjct 4883135 VNHETLNILKYVRPGGGFVPKFPIFARVEVNGLNEEPLFTYLK 4883007 Score = 47.8 bits (112), Expect = 2e-05, Method: Composition-based stats. Identities = 33/108 (31%), Positives = 45/108 (42%), Gaps = 38/108 (35%) Frame = -1 Query 5 KSFYDITAKTLTGEEFKFSSLQGKVVLIENVASLXGTTSRD------------------- 45 KS YD +A+TL G+ S+ +GKV+LI NVA+ G+T + Sbjct 4884183 KSIYDFSAETLDGQLVPLSNYRGKVLLIINVATF*GSTIEEVIFCKSSD*LQSFHIIS*H 4884004 Query 46 -------------------YTQMNELHERFAEKGLVVLGVPCNQFGYQ 74 Y ++N L E F + VLG CNQFG Q Sbjct 4884003 IICAVIFMKGI*FCVPFPQYHRLNALMEMFGDIRFTVLGFSCNQFGLQ 4883860 > JXSJ01000014.1 Miichthys miiuy scaffold14, whole genome shotgun sequence Length=5141783 Score = 55.8 bits (133), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 26/50 (52%), Positives = 34/50 (68%), Gaps = 0/50 (0%) Frame = -1 Query 25 LQGKVVLIENVASLXGTTSRDYTQMNELHERFAEKGLVVLGVPCNQFGYQ 74 +G VV+I NVAS G T +Y+Q +LH R+AE+GL +L P NQFG Q Sbjct 8327 FRGSVVIITNVASK*GKTLVNYSQFADLHARYAERGLRILAFPSNQFGNQ 8178 > JXSJ01000525.1 Miichthys miiuy scaffold525, whole genome shotgun sequence Length=204830 Score = 52.4 bits (124), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 33/91 (36%), Positives = 46/91 (51%), Gaps = 5/91 (5%) Frame = +2 Query 29 VVLIENVASLXGTTSRDYTQMNELHERFAEKGLVVLGVPCNQFGYQENCTNEEILLSLKY 88 V L+ NVAS G T Y +M +L F VL PCNQFG QE +++EI ++ Sbjct 179948 VSLVVNVASECGFTEEHYKEMQQLQRDFGPYHFNVLAFPCNQFGQQEPGSDKEIDSFVRR 180127 Query 89 VRPGNGYEPKFQLLEKVDVNGKNAHPLFTFL 119 V Y F L K+ V G A+ ++ +L Sbjct 180128 V-----YGVSFPLFSKIAVVGTGANNVYKYL 180205 > JXSJ01000013.1 Miichthys miiuy scaffold13, whole genome shotgun sequence Length=5370402 Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 30/94 (32%), Positives = 39/94 (41%), Gaps = 5/94 (5%) Frame = -1 Query 26 QGKVVLIENVASLXGTTSRDYTQMNELHERFAEKGLVVLGVPCNQFGYQENCTNEEILLS 85 + L+ NVAS T +Y M ELH VL PC QFG E T+ +I Sbjct 1302522 HAQASLVVNVASHCEQTEANYRSMQELHRELGTSHFNVLAFPCGQFGDTETGTSRDIEAF 1302343 Query 86 LKYVRPGNGYEPKFQLLEKVDVNGKNAHPLFTFL 119 K + Y F ++ + G A P F FL Sbjct 1302342 AK-----STYGVTFPFFSRIKIMGSEADPAFRFL 1302256 > JXSJ01000010.1 Miichthys miiuy scaffold10, whole genome shotgun sequence Length=6703581 Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 21/39 (54%), Positives = 28/39 (72%), Gaps = 0/39 (0%) Frame = +1 Query 82 ILLSLKYVRPGNGYEPKFQLLEKVDVNGKNAHPLFTFLK 120 + L ++VRPGNG+ P F L +K DVNGK+ +FTFLK Sbjct 2820370 LFLDSRHVRPGNGFVPNFLLFDKGDVNGKDEQEVFTFLK 2820486 Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 21/47 (45%), Positives = 28/47 (60%), Gaps = 0/47 (0%) Frame = +3 Query 140 IIWSPVCRNDIAWNFEKFLIGSDGVPFKRYSRRFLTSGIDGDIKKLL 186 + W P+ +DI WNFEKFL+G DG P R+ S + DI+K L Sbjct 2820942 LFWQPLKMSDIKWNFEKFLVGPDGKPVMRWHPSVNISEVRSDIRKYL 2821082 Lambda K H a alpha 0.320 0.140 0.421 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 15634421776 Database: /export/cursos/20428/BI/genomes/2016/Miichthys_miiuy/genome.fa Posted date: Oct 21, 2016 4:44 PM Number of letters in database: 619,300,777 Number of sequences in database: 6,294 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 13 Window for multiple hits: 40