genewise output Score 616.62 bits over entire alignment Scores as bits over a synchronous coding model Warning: The bits scores is not probablistically correct for single seqs See WWW help for more info SPP00000630_2.0 1 MSGSEPPSGDSGGAGGYAVFYPAGYQALNPEEHGLDRGFRLTAFSDMKG MSGS PP + G F P GY+ PEEHGL+RGFRLTAFSD+KG MSGSTPPPPSAEAVGTEGCF-PPGYKPFKPEEHGLERGFRLTAFSDLKG JXSJ01000927.1:49943 atgtacccctgggggaggtt ccgtactacggcgcgcgtccagttgcag tcgccccccccactgcaggt ccgaactacaaagtaggtgtcctcatag gtcatcgtcaagtgacggtc ccacgtcacggccggcgctcaccgcgga SPP00000630_2.0 50 XGCKVPQETLLKLLQGLEPDRPPGEDGGLGTGVG-DETADFGLVSAAQG XGCKVPQE LLKLL GLE DR G TG D+T++FG G XGCKVPQEALLKLLAGLEADRADG------TGKAEDQTSEFG--QQLPG JXSJ01000927.1:50087 tgtagccggccaccggcgggcggg agagggcatgtg cctcg gggatcaacttattcgtacagcag cgacaaaccatg aatcg accgcgggtgcacggaggacgcca gggcacaaggcc aggcc SPP00000630_2.0 98 PRL IGMDSCVIPLRHGGLSLVQT PRL +GMD CVIPLRHGGLSLVQT PRL G:G[ggt] VGMDCCVIPLRHGGLSLVQT JXSJ01000927.1:50210 cccGGTAAGAA Intron 1 CAGGTggagttgaccacggctcgca cgt <1-----[50220:50811]-1> tgtaggttctgaggtcttac cgc aggcctgctggtagcagcgc SPP00000630_2.0 122 TDFFYPLVEDPYMM GRIACANVLSDL TDFFYPLVEDPYMM GRIACANVLSDL TDFFYPLVEDPYMM GRIACANVLSDL JXSJ01000927.1:50874 agtttccgggctaaGTGAGTT Intron 2 CAGgaagtgagcagc cattacttaacatt<0-----[50916:51801]-0>ggtcgcattgat acccctgggttcgg cgaattcccttg SPP00000630_2.0 148 YAMGITECDNMLMLLSVSQKMNEK ER YAMGITECDNMLMLLS+SQKMN+K +R YAMGITECDNMLMLLSISQKMNDK DR JXSJ01000927.1:51838 tgagaagtgaacaccaaacaaagaGTAGGTT Intron 3 CAGgc actgtcagaatttttgtgaataaa<0-----[51910:52050]-0>ag ccgccggtccgggggtccgggccg cc SPP00000630_2.0 174 DLVLPLMMKGFRDAAEEGGTSVTGGQTVINPWIIIGGVASVVCQPNDFI + V+PL+++GFRDAAEEGGTSVTGGQTVINPWII+GGVASVVCQPN+FI ERVMPLIIRGFRDAAEEGGTSVTGGQTVINPWIIVGGVASVVCQPNEFI JXSJ01000927.1:52057 gcgaccaacgtcgggggggatgaggcagaactaagggggtggtccagta agttctttggtgaccaaggcctcggacttacgtttggtccttgacaatt ggggggatggttcagggagtagaaagtgcccgccaagaagcccgttgcc SPP00000630_2.0 223 PDGAVPGDVLVLTKPLGTQVAVN PDGAVPGDVLVLTKPLGTQVAVN L:M[atg] PDGAVPGDVLVLTKPLGTQVAVN JXSJ01000927.1:52204 ATGTGAGTC Intron 4 CAGGcggggcgggtgcaaccgacggga <2-----[52206:53820]-2> cagctcgattttcactgcatcta gcttagcccgtgcatggaggtgc SPP00000630_2.0 247 AHQWLDI PEKWNKIKLVISREEVEQA AHQWLD PE+WNKIKLV+++EEV++A AHQWLDQ PERWNKIKLVVTKEEVKEA JXSJ01000927.1:53891 gcctcgcGTGAGCA Intron 5 CAGcgataaaacggaagggagg caagtaa<0-----[53912:53992]-0>caggaatatttcaaataac tcggccg taggcgcaatccagatagt SPP00000630_2.0 273 YQEAMLNMATLNRT AALMHKFNA YQEAM +MATLNRT A LMHKF A YQEAMFSMATLNRT A:A[gcg] AGLMHKFQA JXSJ01000927.1:54050 tcggattagacacaGGTACAAA Intron 6 CAGCGggcacatcg aaacttctcctagc <1-----[54093:54229]-1> cgttaatac tgacgccgagacca acagcgcgc SPP00000630_2.0 297 HAATDITGFGIIGHARNLAKQQKNDVAFVIHNLPIISKMAAISKAGGNL HAATD+TGFG++GHA NLA QQ+N+VAFVIHNLPI++KMAAISKA GNL HAATDVTGFGLLGHANNLAAQQRNEVAFVIHNLPILAKMAAISKACGNL JXSJ01000927.1:54259 cggaggagtgtcgcgaacggcccagggtgacaccacgaaggaaagtgac acccatcgtgttgacaatccaagaatctttaatcttcatcctgacggat ccgacgatccgcttccccaagaacggttcctcatcgcggtcctactacg SPP00000630_2.0 346 FGLLQGTSSETS GLLICLPREQA F L+QGTS+ETS GLL+CLPREQA FNLVQGTSAETS G:G[ggt] GLLVCLPREQA JXSJ01000927.1:54406 tacgcgatggatGGTATGAA Intron 7 CAGGTgccgtccagcg tattagcccacc <1-----[54443:54535]-1> gtttgtcgaac ccgtgcgaagtt ggggtgcaggg SPP00000630_2.0 370 ARFCAEMKSSRMGLLGAGQDGGVGDGQQAWIIGIVEKGNRCARIIDKPR A+FC+EMKS G G G GG AWIIGIVEKG+R ARIIDKPR AKFCSEMKSQSSGAGGQGVAGG------AWIIGIVEKGDRRARIIDKPR JXSJ01000927.1:54571 gatttgaaacatggggcggggg gtaagaggaggccgcaagacc catgcatagagcgcggagtcgg cgttgttaagaggcgttaacg cgccaaggcgccatatggggca ggatatcagcccctccccgcc SPP00000630_2.0 419 IIEV II + IISL JXSJ01000927.1:54700 aatc ttct cctg // Making a G in phase 1 intron Making a M in phase 2 intron Making a A in phase 1 intron Making a G in phase 1 intron >JXSJ01000927.1:subseq(24256,81714).pep MSGSTPPPPSAEAVGTEGCFPPGYKPFKPEEHGLERGFRLTAFSDLKGXGCKVPQEALLK LLAGLEADRADGTGKAEDQTSEFGQQLPGPRLGVGMDCCVIPLRHGGLSLVQTTDFFYPL VEDPYMMGRIACANVLSDLYAMGITECDNMLMLLSISQKMNDKDRERVMPLIIRGFRDAA EEGGTSVTGGQTVINPWIIVGGVASVVCQPNEFIMPDGAVPGDVLVLTKPLGTQVAVNAH QWLDQPERWNKIKLVVTKEEVKEAYQEAMFSMATLNRTAAGLMHKFQAHAATDVTGFGLL GHANNLAAQQRNEVAFVIHNLPILAKMAAISKACGNLFNLVQGTSAETSGGLLVCLPREQ AAKFCSEMKSQSSGAGGQGVAGGAWIIGIVEKGDRRARIIDKPRIISL // >JXSJ01000927.1:subseq(24256,81714).[49943:54711].sp ATGTCTGGCTCAACTCCCCCGCCTCCCTCAGCAGAGGCTGTGGGAACCGAGGGGTGTTTC CCCCCCGGATACAAGCCTTTCAAACCCGAGGAGCACGGCCTGGAGCGCGGGTTCCGTCTC ACAGCCTTCTCGGACCTGAAGGGATGAGGCTGCAAGGTCCCGCAGGAGGCTCTGCTCAAA CTCCTGGCGGGACTGGAGGCAGACCGGGCCGACGGAACGGGGAAGGCCGAAGACCAAACA TCGGAGTTCGGCCAACAGTTGCCCGGCCCCCGGCTCGGTGTAGGGATGGACTGCTGTGTG ATCCCTCTGAGGCATGGAGGGCTCTCACTGGTCCAGACCACAGACTTCTTCTACCCTCTG GTGGAGGATCCTTACATGATGGGCAGGATAGCATGTGCTAACGTCCTCAGTGATCTGTAC GCCATGGGCATCACGGAGTGTGACAACATGCTGATGCTGCTGAGTATCAGCCAGAAGATG AACGACAAGGACCGCGAGCGGGTGATGCCGCTGATAATTCGGGGGTTTCGTGACGCAGCG GAGGAGGGAGGGACTTCAGTGACAGGAGGACAGACTGTGATCAACCCCTGGATCATCGTA GGAGGGGTAGCATCGGTCGTCTGCCAGCCTAATGAGTTCATCATGCCGGACGGTGCTGTA CCGGGCGACGTCTTGGTTCTGACCAAACCTCTGGGGACACAGGTGGCTGTGAACGCTCAC CAGTGGCTCGACCAGCCTGAAAGGTGGAACAAGATCAAACTAGTTGTCACCAAAGAGGAA GTTAAAGAGGCTTATCAGGAAGCCATGTTCTCCATGGCAACGCTAAACCGCACAGCGGCA GGCCTAATGCACAAGTTCCAGGCCCACGCCGCGACAGACGTGACAGGTTTCGGCTTGCTC GGTCATGCCAACAACCTCGCAGCACAGCAACGAAACGAGGTGGCTTTTGTCATCCATAAC CTACCTATCCTGGCCAAGATGGCTGCCATCAGTAAAGCCTGTGGAAACCTGTTCAACCTG GTTCAGGGCACGTCAGCAGAGACTTCTGGTGGGCTGCTGGTGTGTCTGCCCAGAGAGCAG GCGGCCAAGTTCTGCTCAGAAATGAAGAGCCAGAGCTCCGGAGCTGGAGGTCAGGGGGTG GCGGGCGGAGCGTGGATAATTGGAATTGTCGAAAAGGGCGACCGCCGCGCTCGCATCATC GACAAGCCCCGCATCATCTCTCTG // JXSJ01000927.1:subseq(24256,81714) GeneWise match 49943 54711 627.60 + . JXSJ01000927.1:subseq(24256,81714)-genewise-prediction-1 JXSJ01000927.1:subseq(24256,81714) GeneWise cds 49943 50219 0.00 + 0 JXSJ01000927.1:subseq(24256,81714)-genewise-prediction-1 JXSJ01000927.1:subseq(24256,81714) GeneWise intron 50220 50811 0.00 + . JXSJ01000927.1:subseq(24256,81714)-genewise-prediction-1 JXSJ01000927.1:subseq(24256,81714) GeneWise cds 50812 50915 0.00 + 2 JXSJ01000927.1:subseq(24256,81714)-genewise-prediction-1 JXSJ01000927.1:subseq(24256,81714) GeneWise intron 50916 51801 0.00 + . JXSJ01000927.1:subseq(24256,81714)-genewise-prediction-1 JXSJ01000927.1:subseq(24256,81714) GeneWise cds 51802 51909 0.00 + 0 JXSJ01000927.1:subseq(24256,81714)-genewise-prediction-1 JXSJ01000927.1:subseq(24256,81714) GeneWise intron 51910 52050 0.00 + . JXSJ01000927.1:subseq(24256,81714)-genewise-prediction-1 JXSJ01000927.1:subseq(24256,81714) GeneWise cds 52051 52205 0.00 + 0 JXSJ01000927.1:subseq(24256,81714)-genewise-prediction-1 JXSJ01000927.1:subseq(24256,81714) GeneWise intron 52206 53820 0.00 + . JXSJ01000927.1:subseq(24256,81714)-genewise-prediction-1 JXSJ01000927.1:subseq(24256,81714) GeneWise cds 53821 53911 0.00 + 1 JXSJ01000927.1:subseq(24256,81714)-genewise-prediction-1 JXSJ01000927.1:subseq(24256,81714) GeneWise intron 53912 53992 0.00 + . JXSJ01000927.1:subseq(24256,81714)-genewise-prediction-1 JXSJ01000927.1:subseq(24256,81714) GeneWise cds 53993 54092 0.00 + 0 JXSJ01000927.1:subseq(24256,81714)-genewise-prediction-1 JXSJ01000927.1:subseq(24256,81714) GeneWise intron 54093 54229 0.00 + . JXSJ01000927.1:subseq(24256,81714)-genewise-prediction-1 JXSJ01000927.1:subseq(24256,81714) GeneWise cds 54230 54442 0.00 + 2 JXSJ01000927.1:subseq(24256,81714)-genewise-prediction-1 JXSJ01000927.1:subseq(24256,81714) GeneWise intron 54443 54535 0.00 + . JXSJ01000927.1:subseq(24256,81714)-genewise-prediction-1 JXSJ01000927.1:subseq(24256,81714) GeneWise cds 54536 54711 0.00 + 2 JXSJ01000927.1:subseq(24256,81714)-genewise-prediction-1 //