Command line: [exonerate -m p2g --showtargetgff -q g6pd_hs.aa.fa.canviat -t genomeg6pd_JXSJ01000005.1.fa] Hostname: [ws101182u] C4 Alignment: ------------ Query: SPP00002930_2.0 # Protein # glucose-6-phosphate dehydrogenase (G6PD) # Human Target: JXSJ01000005.1:subseq(2690552,102843) Miichthys miiuy scaffold5, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 1932 Query range: 36 -> 542 Target range: 53527 -> 49999 37 : LeuSerArgThrGlnValCysGlyIleLeuArgGluGluLeuPheGlnGlyAspAlaPhe : 56 |||!!!|||:!!:!!|||! !||| ||||||..!||||||!:! !! !||| !! ! LeuThrArgSerGluValPheGlyGlnLeuArgArgGluLeuTyrGlyGluAspGlnSer 53527 : CTGACTCGCTCTGAGGTGTTTGGACAGCTCAGGAGGGAGCTCTATGGAGAGGACCAGTCC : 53470 57 : HisGlnSerAspThrHisIlePheIleIleMetGlyAlaSer >>>> Target Intr : 71 ...|||:::||||||||||||||||||:!:||||||||| 603 bp ThrHisSerAsnThrHisIlePheIleIleLeuGlyAlaSer++ 53469 : ACtcactccaacacacacatatttataatCCTTGGAGCCTCTgt................ : 53423 72 : on 1 >>>> GlyAspLeuAlaLysLysLysIleTyrProThrIle{Tr} >>>> Ta : 83 |||||||||||||||||||||||||||||||||:!!{||} ++GlyAspLeuAlaLysLysLysIleTyrProThrLeu{Tr}++ 53422 : .........agGGGGATCTTGCTAAAAAGAAGATCTATCCAACTTTA{TG}gt....... : 52782 84 : rget Intron 2 >>>> {p}TrpLeuPheArgAspGlyLeuLeuProGluAsnThrP : 96 128 bp {|}|||||||||||||||||||||||||||!!::!!|||! ++{p}TrpLeuPheArgAspGlyLeuLeuProAspAspThrT 52781 : ..................ag{G}TGGTTATTCAGGGATGGCCTCCTCCCAGATGACACCT : 52619 97 : heIleValGlyTyrAlaArgSerArgLeuThrValAlaAspIleArgLysGlnSerGluP : 116 :!.!!||||||!:!|||||||||!.!||||||:!!! !:!!|||!:! ! !!!! !| yrPheValGlyPheAlaArgSerAsnLeuThrIleGluAsnIleLysAlaAlaCysLeuP 52618 : ACTTTGTGGGTTTTGCCAGGTCTAACCTGACAATCGAGAACATCAAGGCAGCATGTCTAC : 52559 117 : roPhePheLys >>>> Target Intron 3 >>>> AlaThrProGluGluLysLe : 126 || !.!.||| 88 bp !.!||| !!!:|||!.. roHisMetLys++ ++ValThrAspAspGluSerGl 52558 : CTCATATGAAGgt.........................agGTCACTGATGACGAGAGTGA : 52441 127 : uLysLeuGluAspPhePheAlaArgAsnSerTyrValAlaGlyGlnTyrAspAspAlaAl : 146 !!..|||..!! !||||||::!|||||||||||| !! !|||::!|||||||||! !:: uSerLeuSerAlaPhePheSerArgAsnSerTyrPheArgGlyArgTyrAspAspAspSe 52440 : GAGTCTCTCAGCCTTCTTCAGTAGGAACTCCTACTTTAGAGGCAGGTATGATGACGACAG : 52381 147 : aSerTyrGlnArgLeuAsnSerHisMetAsnAlaLeuHisLeuGlySerGlnAlaAsnAr : 166 !|||!:!...!:!||||||:!!|||:!! :!!|||! ! !|||:!!.!.|||||||| rSerPheSerGlnLeuAsnAlaHisLeuLeuSerLeuProGlyGlyAlaAspAlaAsnAr 52380 : CTCTTTCTCTCAACTCAATGCTCATCTGTTGTCTCTACCTGGGGGAGCTGACGCCAACAG : 52321 167 : gLeuPheTyrLeuAlaLeuProProThrValTyrGluAlaValThrLysAsnIleHisGl : 186 ||||||||||||||||||||||||||||:!!|||.!. !|||!:!! !||||||....! gLeuPheTyrLeuAlaLeuProProThrIleTyrHisHisValSerThrAsnIleArgAs 52320 : ACTCTTTTACCTGGCTCTACCACCCACCATCTACCACCATGTCAGCACAAACATCAGAAA : 52261 187 : uSerCysMetSerGln{Il} >>>> Target Intron 4 >>>> {e}GlyTrpAs : 195 . !|||||||||...{! } 84 bp {!}|||||||| nHisCysMetSerSer{Ly}++ ++{s}GlyTrpAs 52260 : CCACTGCATGAGCTCC{AA}gt.........................ag{A}GGCTGGAA : 52150 196 : nArgIleIleValGluLysProPheGlyArgAspLeuGlnSerSerAspArgLeuSerAs : 215 ||||:!:|||||||||||||||||||||||||||||||||||||||.!...!|||||| nArgValIleValGluLysProPheGlyArgAspLeuGlnSerSerGlnGluLeuSerAl 52149 : CAGGGTGATTGTTGAGAAGCCCTTTGGCCGTGACCTCCAGAGCTCACAGGAGCTGTCAGC : 52090 216 : nHisIleSerSerLeuPheArgGluAspGlnIleTyrArgIleAspHisTyrLeuGlyLy : 235 !|||:!:||||||||||||! !|||||||||||||||||||||||||||||||||||||| aHisLeuSerSerLeuPheThrGluAspGlnIleTyrArgIleAspHisTyrLeuGlyLy 52089 : CCACCTGTCCTCCCTGTTCACAGAGGACCAGATCTACCGCATAGACCACTACCTAGGCAA : 52030 236 : sGluMetValGlnAsnLeuMetValLeu{Ar} >>>> Target Intron 5 >>>> : 245 ||||||||||||||||||||||||||||{||} 189 bp sGluMetValGlnAsnLeuMetValLeu{Ar}++ + 52029 : AGAGATGGTCCAGAACCTCATGGTACTC{AG}gt.........................a : 51811 246 : {g}PheAlaAsnArgIlePheGlyProIleTrpAsnArgAspAsnIleAlaCysValIl : 264 {|}|||!.!||||||||||||||||||||||||||||||:!!!:!:!!|||||||||:! +{g}PheGlyAsnArgIlePheGlyProIleTrpAsnArgAsnSerValAlaCysValVa 51810 : g{G}TTTGGAAATCGCATCTTTGGACCCATATGGAACAGGAACAGTGTAGCCTGTGTGGT : 51754 265 : eLeuThrPheLysGluProPheGlyThrGluGlyArgGlyGlyTyrPheAspGluPheGl : 284 !|||||||||||||||||||||||||||:!!|||||||||||||||||||||!!:||||| lLeuThrPheLysGluProPheGlyThrGlnGlyArgGlyGlyTyrPheAspAspPheGl 51753 : CCTCACCTTCAAGGAGCCTTTTGGCACTCAGGGCCGTGGAGGATACTTTGATGACTTTGG : 51694 285 : yIleIle{Ar} >>>> Target Intron 6 >>>> {g}AspValMetGlnAsnHi : 293 |||||||{||} 105 bp {|}||||||||||||||||| yIleIle{Ar}++ ++{g}AspValMetGlnAsnHi 51693 : TATCATT{CG}gt.........................ag{A}GATGTCATGCAGAATCA : 51562 294 : sLeuLeuGlnMetLeuCysLeuValAlaMetGluLysProAlaSerThrAsnSerAspAs : 313 |||||||||||||||||||||||||||||||||||||||||||||||||||| !!||||| sLeuLeuGlnMetLeuCysLeuValAlaMetGluLysProAlaSerThrAsnProAspAs 51561 : TCTCCTCCAGATGCTCTGTTTGGTCGCCATGGAGAAACCTGCTTCCACCAACCCAGATGA : 51502 314 : pValArgAspGluLys >>>> Target Intron 7 >>>> ValLysValLeuLys : 323 |||||||||||||||| 100 bp ||||||||||||||| pValArgAspGluLys++ ++ValLysValLeuLys 51501 : CGTGAGGGATGAAAAGgt.........................agGTGAAGGTATTGAAG : 51372 324 : CysIleSerGluValGlnAlaAsnAsnValValLeuGlyGlnTyrValGlyAsnProAsp : 343 ||||||:!! ||| !.!::::!!||||||||||||||||||||||||:!!|||!!: CysIleAlaProValAlaValSerAspValValLeuGlyGlnTyrValGlyAspProGlu 51371 : TGTATAGCCCCTGTTGCTGTGTCAGATGTGGTGCTCGGCCAGTATGTGGGGGACCCTGAG : 51312 344 : GlyGluGlyGluAlaThrLysGlyTyrLeuAspAspProThrValProArgGlySerThr : 363 |||||||||:!!:!!! ! !|||||||||||||||||||||||||||..!|||||| ! GlyGluGlyGlnSerLysLeuGlyTyrLeuAspAspProThrValProGluGlySerCys 51311 : GGGGAGGGCCAGTCGAAACTGGGTTACCTTGATGACCCCACTGTACCAGAAGGCTCCTGC : 51252 364 : ThrAlaThrPheAlaAlaValValLeuTyrValGluAsnGluArgTrpAsp{G} >>>> : 381 ||| !!|||||||||.!!!.!||||||||||||:!!|||||||||||||||{|} ThrProThrPheAlaThrAlaValLeuTyrValGlnAsnGluArgTrpAsp{G}++ 51251 : ACACCAACCTTTGCCACTGCCGTGCTCTATGTCCAGAATGAAAGATGGGAT{G}gt.... : 51195 382 : Target Intron 8 >>>> {ly}ValProPheIleLeuArgCysGlyLysAlaLeu : 392 94 bp {||}||||||||||||||||||||||||||||||||| ++{ly}ValProPheIleLeuArgCysGlyLysAlaLeu 51194 : .....................ag{GA}GTTCCTTTTATTCTCCGCTGTGGTAAAGCCCTG : 51071 393 : AsnGluArgLysAlaGluValArgLeuGlnPheHisAspValAlaGlyAspIlePheHis : 412 ||||||||||||||||||||||||||||||||| !|||||| !!|||||||||||| ! AsnGluArgLysAlaGluValArgLeuGlnPheThrAspValProGlyAspIlePheAla 51070 : AATGAGCGGAAGGCAGAAGTGCGTCTGCAGTTCACTGACGTGCCAGGAGACATCTTTGCC : 51011 413 : GlnGlnCysLysArgAsnGluLeuValIleArgValGlnProAsnGluAlaValTyrThr : 432 :!!!::|||:!!|||||||||||||||:!!||||||||||||:!!||||||:!!||| ! GluArgCysGlnArgAsnGluLeuValValArgValGlnProAspGluAlaIleTyrLeu 51010 : GAACGCTGCCAGAGAAACGAGCTGGTGGTACGGGTGCAGCCAGATGAAGCCATTTACCTG : 50951 433 : LysMetMetThrLysLysProGlyMetPhePheAsnProGluGluSerGluLeuAspLeu : 452 |||||||||||||||!:!||||||:!:!:!|||!:!|||||||||:::|||||||||||| LysMetMetThrLysArgProGlyValTyrPheSerProGluGluThrGluLeuAspLeu 50950 : AAGATGATGACCAAGAGGCCTGGGGTTTACTTCAGCCCAGAggagacagagctggacctg : 50891 453 : ThrTyrGlyAsnArgTyrLys >>>> Target Intron 9 >>>> AsnValLysL : 463 |||||| !!:!||||||||| 428 bp |||||||||| ThrTyrLysSerArgTyrLys++ ++AsnValLysL 50890 : acCTACAAGAGCAGATACAAGgt.........................agaaTGTAAAGC : 50430 464 : euProAspAlaTyrGluArgLeuIleLeuAspValPheCysGlySerGlnMetHisPheV : 483 ||||||||||||||||||||||||||||||||||||||||||||!:!||||||||||||| euProAspAlaTyrGluArgLeuIleLeuAspValPheCysGlyAsnGlnMetHisPheV 50429 : TCCCAGATGCTTATGAGAGGCTCATTCTGGATGTCTTCTGTGGAAATCAGATGCATTTTG : 50370 484 : alArg{Se} >>>> Target Intron 10 >>>> {r}AspGluLeuArgGluAla : 491 |||||{||} 94 bp {|}|||||||||||||||||| alArg{Se}++ ++{r}AspGluLeuArgGluAla 50369 : TCCGC{AG}gt..........................ag{C}GATGAGTTACGGGAGGCC : 50252 492 : TrpArgIlePheThrProLeuLeuHisGlnIleGluLeuGluLysProLysProIlePro : 511 |||||||||||||||||||||||||||||||||||| |||||| :::||||||||| TrpArgIlePheThrProLeuLeuHisGlnIleGluAlaGluLysThrGlnProIlePro 50251 : TGGAGGATCTTCACCCCCCTCCTACACCAAAtagaggcagagaaaacacagcccATCCCT : 50192 512 : TyrIleTyrGly{Se} >>>> Target Intron 11 >>>> {r}ArgGlyProTh : 520 |||! !||||||{||} 97 bp {|}|||||||||!. TyrThrTyrGly{Se}++ ++{r}ArgGlyProAs 50191 : TACACATATGGA{AG}gt..........................ag{T}CGTGGTCCAAA : 50068 521 : rGluAlaAspGluLeuMetLysArgValGlyPheGlnTyrGluGlyThrTyrLysTrpVa : 540 !|||||||||!!:|||:!!|||||||||||||||!::||||||||||||||||||||||| nGluAlaAspAspLeuValLysArgValGlyPheArgTyrGluGlyThrTyrLysTrpVa 50067 : CGAGGCTGATGATCTTGTGAAGAGGGTGGGATTCCGCTATGAAGGAACATACAAGTGGGT : 50008 541 : lAsnPro : 542 |.!.||| lGlnPro 50007 : GCAGCCC : 50000 vulgar: SPP00002930_2.0 36 542 . JXSJ01000005.1:subseq(2690552,102843) 53527 49999 - 1932 M 34 102 5 0 2 I 0 599 3 0 2 M 12 36 S 0 2 5 0 2 I 0 124 3 0 2 S 1 1 M 36 108 5 0 2 I 0 84 3 0 2 M 72 216 S 0 2 5 0 2 I 0 80 3 0 2 S 1 1 M 52 156 S 0 2 5 0 2 I 0 185 3 0 2 S 1 1 M 41 123 S 0 2 5 0 2 I 0 101 3 0 2 S 1 1 M 31 93 5 0 2 I 0 96 3 0 2 M 62 186 S 0 1 5 0 2 I 0 90 3 0 2 S 1 2 M 78 234 5 0 2 I 0 424 3 0 2 M 25 75 S 0 2 5 0 2 I 0 90 3 0 2 S 1 1 M 30 90 S 0 2 5 0 2 I 0 93 3 0 2 S 1 1 M 26 78 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2016-11-29 ##type DNA # # # seqname source feature start end score strand frame attributes # JXSJ01000005.1:subseq(2690552,102843) exonerate:protein2genome:local gene 50000 53527 1932 - . gene_id 1 ; sequence SPP00002930_2.0 ; gene_orientation + JXSJ01000005.1:subseq(2690552,102843) exonerate:protein2genome:local cds 53426 53527 . - . JXSJ01000005.1:subseq(2690552,102843) exonerate:protein2genome:local exon 53426 53527 . - . insertions 0 ; deletions 0 JXSJ01000005.1:subseq(2690552,102843) exonerate:protein2genome:local splice5 53424 53425 . - . intron_id 1 ; splice_site "GT" JXSJ01000005.1:subseq(2690552,102843) exonerate:protein2genome:local intron 52823 53425 . - . intron_id 1 JXSJ01000005.1:subseq(2690552,102843) exonerate:protein2genome:local splice3 52823 52824 . - . intron_id 0 ; splice_site "AG" JXSJ01000005.1:subseq(2690552,102843) exonerate:protein2genome:local cds 52785 52822 . - . JXSJ01000005.1:subseq(2690552,102843) exonerate:protein2genome:local exon 52785 52822 . - . insertions 0 ; deletions 0 JXSJ01000005.1:subseq(2690552,102843) exonerate:protein2genome:local splice5 52783 52784 . - . intron_id 2 ; splice_site "GT" JXSJ01000005.1:subseq(2690552,102843) exonerate:protein2genome:local intron 52657 52784 . - . intron_id 2 JXSJ01000005.1:subseq(2690552,102843) exonerate:protein2genome:local splice3 52657 52658 . - . intron_id 1 ; splice_site "AG" JXSJ01000005.1:subseq(2690552,102843) exonerate:protein2genome:local cds 52548 52656 . - . JXSJ01000005.1:subseq(2690552,102843) exonerate:protein2genome:local exon 52548 52656 . - . insertions 0 ; deletions 0 JXSJ01000005.1:subseq(2690552,102843) exonerate:protein2genome:local splice5 52546 52547 . - . intron_id 3 ; splice_site "GT" JXSJ01000005.1:subseq(2690552,102843) exonerate:protein2genome:local intron 52460 52547 . - . intron_id 3 JXSJ01000005.1:subseq(2690552,102843) exonerate:protein2genome:local splice3 52460 52461 . - . intron_id 2 ; splice_site "AG" JXSJ01000005.1:subseq(2690552,102843) exonerate:protein2genome:local cds 52242 52459 . - . JXSJ01000005.1:subseq(2690552,102843) exonerate:protein2genome:local exon 52242 52459 . - . insertions 0 ; deletions 0 JXSJ01000005.1:subseq(2690552,102843) exonerate:protein2genome:local splice5 52240 52241 . - . intron_id 4 ; splice_site "GT" JXSJ01000005.1:subseq(2690552,102843) exonerate:protein2genome:local intron 52158 52241 . - . intron_id 4 JXSJ01000005.1:subseq(2690552,102843) exonerate:protein2genome:local splice3 52158 52159 . - . intron_id 3 ; splice_site "AG" JXSJ01000005.1:subseq(2690552,102843) exonerate:protein2genome:local cds 51999 52157 . - . JXSJ01000005.1:subseq(2690552,102843) exonerate:protein2genome:local exon 51999 52157 . - . insertions 0 ; deletions 0 JXSJ01000005.1:subseq(2690552,102843) exonerate:protein2genome:local splice5 51997 51998 . - . intron_id 5 ; splice_site "GT" JXSJ01000005.1:subseq(2690552,102843) exonerate:protein2genome:local intron 51810 51998 . - . intron_id 5 JXSJ01000005.1:subseq(2690552,102843) exonerate:protein2genome:local splice3 51810 51811 . - . intron_id 4 ; splice_site "AG" JXSJ01000005.1:subseq(2690552,102843) exonerate:protein2genome:local cds 51684 51809 . - . JXSJ01000005.1:subseq(2690552,102843) exonerate:protein2genome:local exon 51684 51809 . - . insertions 0 ; deletions 0 JXSJ01000005.1:subseq(2690552,102843) exonerate:protein2genome:local splice5 51682 51683 . - . intron_id 6 ; splice_site "GT" JXSJ01000005.1:subseq(2690552,102843) exonerate:protein2genome:local intron 51579 51683 . - . intron_id 6 JXSJ01000005.1:subseq(2690552,102843) exonerate:protein2genome:local splice3 51579 51580 . - . intron_id 5 ; splice_site "AG" JXSJ01000005.1:subseq(2690552,102843) exonerate:protein2genome:local cds 51485 51578 . - . JXSJ01000005.1:subseq(2690552,102843) exonerate:protein2genome:local exon 51485 51578 . - . insertions 0 ; deletions 0 JXSJ01000005.1:subseq(2690552,102843) exonerate:protein2genome:local splice5 51483 51484 . - . intron_id 7 ; splice_site "GT" JXSJ01000005.1:subseq(2690552,102843) exonerate:protein2genome:local intron 51385 51484 . - . intron_id 7 JXSJ01000005.1:subseq(2690552,102843) exonerate:protein2genome:local splice3 51385 51386 . - . intron_id 6 ; splice_site "AG" JXSJ01000005.1:subseq(2690552,102843) exonerate:protein2genome:local cds 51198 51384 . - . JXSJ01000005.1:subseq(2690552,102843) exonerate:protein2genome:local exon 51198 51384 . - . insertions 0 ; deletions 0 JXSJ01000005.1:subseq(2690552,102843) exonerate:protein2genome:local splice5 51196 51197 . - . intron_id 8 ; splice_site "GT" JXSJ01000005.1:subseq(2690552,102843) exonerate:protein2genome:local intron 51104 51197 . - . intron_id 8 JXSJ01000005.1:subseq(2690552,102843) exonerate:protein2genome:local splice3 51104 51105 . - . intron_id 7 ; splice_site "AG" JXSJ01000005.1:subseq(2690552,102843) exonerate:protein2genome:local cds 50868 51103 . - . JXSJ01000005.1:subseq(2690552,102843) exonerate:protein2genome:local exon 50868 51103 . - . insertions 0 ; deletions 0 JXSJ01000005.1:subseq(2690552,102843) exonerate:protein2genome:local splice5 50866 50867 . - . intron_id 9 ; splice_site "GT" JXSJ01000005.1:subseq(2690552,102843) exonerate:protein2genome:local intron 50440 50867 . - . intron_id 9 JXSJ01000005.1:subseq(2690552,102843) exonerate:protein2genome:local splice3 50440 50441 . - . intron_id 8 ; splice_site "ag" JXSJ01000005.1:subseq(2690552,102843) exonerate:protein2genome:local cds 50363 50439 . - . JXSJ01000005.1:subseq(2690552,102843) exonerate:protein2genome:local exon 50363 50439 . - . insertions 0 ; deletions 0 JXSJ01000005.1:subseq(2690552,102843) exonerate:protein2genome:local splice5 50361 50362 . - . intron_id 10 ; splice_site "GT" JXSJ01000005.1:subseq(2690552,102843) exonerate:protein2genome:local intron 50269 50362 . - . intron_id 10 JXSJ01000005.1:subseq(2690552,102843) exonerate:protein2genome:local splice3 50269 50270 . - . intron_id 9 ; splice_site "aG" JXSJ01000005.1:subseq(2690552,102843) exonerate:protein2genome:local cds 50176 50268 . - . JXSJ01000005.1:subseq(2690552,102843) exonerate:protein2genome:local exon 50176 50268 . - . insertions 0 ; deletions 0 JXSJ01000005.1:subseq(2690552,102843) exonerate:protein2genome:local splice5 50174 50175 . - . intron_id 11 ; splice_site "GT" JXSJ01000005.1:subseq(2690552,102843) exonerate:protein2genome:local intron 50079 50175 . - . intron_id 11 JXSJ01000005.1:subseq(2690552,102843) exonerate:protein2genome:local splice3 50079 50080 . - . intron_id 10 ; splice_site "AG" JXSJ01000005.1:subseq(2690552,102843) exonerate:protein2genome:local cds 50000 50078 . - . JXSJ01000005.1:subseq(2690552,102843) exonerate:protein2genome:local exon 50000 50078 . - . insertions 0 ; deletions 0 JXSJ01000005.1:subseq(2690552,102843) exonerate:protein2genome:local similarity 50000 53527 1932 - . alignment_id 1 ; Query SPP00002930_2.0 ; Align 53528 37 102 ; Align 52823 71 36 ; Align 52656 84 108 ; Align 52460 120 216 ; Align 52157 193 156 ; Align 51809 246 123 ; Align 51578 288 93 ; Align 51385 319 186 ; Align 51102 382 234 ; Align 50440 460 75 ; Align 50268 486 90 ; Align 50078 517 78 # --- END OF GFF DUMP --- # -- completed exonerate analysis