Command line: [exonerate -m p2g --showtargetgff -q elavl1_hs.aa.fa.canviat -t genomeelavl1_JXSJ01000369.1.fa] Hostname: [ws101071u] C4 Alignment: ------------ Query: SPP00002928_2.0 # Protein # ELAV like RNA binding protein 1 (ELAVL1) # Human Target: JXSJ01000369.1:subseq(224913,62487) Miichthys miiuy scaffold369, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 1437 Query range: 0 -> 326 Target range: 52815 -> 49999 1 : MetSerAsnGlyTyrGluAspHisMetAlaGluAspCysArgGlyAspIleGlyArgThr : 20 |||||||||||||||||||||||||||!.!! !||| ..!||| ! !!.!!:!||| MetSerAsnGlyTyrGluAspHisMetGlyGlyAsp---GluGlyLysAspAlaLysThr 52815 : ATGTCAAACGGTTATGAAGACCACATGGGAGGGGAT---GAGGGGAAGGACGCCAAGACC : 52761 21 : AsnLeuIleValAsnTyrLeuProGlnAsnMetThrGlnAspGluLeuArgSerLeuPhe : 40 |||||||||||||||||||||||||||!:!|||||||||||||||||||||||||||||| AsnLeuIleValAsnTyrLeuProGlnSerMetThrGlnAspGluLeuArgSerLeuPhe 52760 : AACCTGATAGTGAACTACCTGCCTCAGAGCATGACGCAGGACGAGCTGCGGAGCCTCTTC : 52701 41 : SerSerIleGlyGluValGluSerAlaLysLeuIleArgAspLysValAla{G} >>>> : 58 |||||||||||||||||||||||||||||||||||||||||||||||||||{|} SerSerIleGlyGluValGluSerAlaLysLeuIleArgAspLysValAla{G}++ 52700 : AGCAGCATCGGAGAGGTGGAGTCCGCCAAGCTGATTCGAGACAAAGTCGCA{G}gt.... : 52644 59 : Target Intron 1 >>>> {ly}HisSerLeuGlyTyrGlyPheValAsnTyrVal : 69 538 bp {||}||||||||||||||||||||||||||||||:!! ++{ly}HisSerLeuGlyTyrGlyPheValAsnTyrLeu 52643 : .....................ag{gC}CACAGTTTAGGGTACGGATTTGTTAACTATCTT : 52076 70 : ThrAlaLysAspAlaGluArgAlaIleAsnThrLeuAsnGlyLeuArgLeuGlnSerLys : 89 !.! !!!..||||||!!:|||||||||!:!|||||||||||||||||||||||||||||| AsnProSerAspAlaAspArgAlaIleSerThrLeuAsnGlyLeuArgLeuGlnSerLys 52075 : AACCCTAGTGATGCAGACAGAGCTATCAGTACACTGAATGGACTAAGGCTACAGTCCAAA : 52016 90 : ThrIleLys >>>> Target Intron 2 >>>> ValSerTyrAlaArgProSerS : 100 ||||||||| 635 bp |||||||||||||||||||||| ThrIleLys++ ++ValSerTyrAlaArgProSerS 52015 : ACTATCAAGgt.........................agGTTTCATACGCACGGCCCAGTT : 51348 101 : erGluValIleLysAspAlaAsnLeuTyrIleSerGlyLeuProArgThrMetThrGlnL : 120 ||!!:..!||||||||||||||||||||||||||||||||||||!:!.!!|||||||||| erAspThrIleLysAspAlaAsnLeuTyrIleSerGlyLeuProLysAlaMetThrGlnL 51347 : CTGATACAATAAAGGATGCCAACTTATATATCAGCGGCCTGCCAAAGGCCATGACCCAGA : 51288 121 : ysAspValGluAspMetPheSerArgPheGlyArgIleIleAsnSerArgValLeuValA : 140 ||||||||||||||||||||||||||||||||!.!||||||||||||||||||||||||| ysAspValGluAspMetPheSerArgPheGlyHisIleIleAsnSerArgValLeuValA 51287 : AGGACGTGGAGGACATGTTTTCACGCTTCGGACACATCATTAACTCTCGTGTACTTGTTG : 51228 141 : spGlnThrThr{G} >>>> Target Intron 3 >>>> {ly}LeuSerArgGlyV : 149 |||||.!!|||{|} 126 bp {||} !|||||||||| spGlnAlaThr{G}++ ++{ly}GlySerArgGlyV 51227 : ATCAGGCCACA{G}gt.........................ag{GT}GGGTCCCGCGGGG : 51075 150 : alAlaPheIleArgPheAspLysArgSerGluAlaGluGluAlaIleThrSerPheAsnG : 169 ||||||||||||||||||||||||||:!!|||||||||||||||:!!! !!:!.!.|||| alAlaPheIleArgPheAspLysArgAlaGluAlaGluGluAlaValLysAsnLeuAsnG 51074 : TGGCTTTTATCCGGTTTGACAAGCGGGCAGAGGCCGAGGAGGCCGTCAAAAACCTAAACG : 51015 170 : lyHisLysProProGlySerSerGluProIleThrValLysPheAlaAlaAsnProAsnG : 189 ||!!.||||||||||||:!!|||||||||||||||||||||||||||||||||||||||| lyGlnLysProProGlyAlaSerGluProIleThrValLysPheAlaAlaAsnProAsnG 51014 : GCCAAAAACCACCTGGAGCCTCCgagccaatcacagtgaaattTGCTGCCAACCCGAACC : 50955 190 : lnAsnLysAsnValAlaLeuLeuSerGlnLeuTyrHisSerProAlaArgArgPheGlyG : 209 || ||||||..! !|||:!!|||||||||||||||!:!! !:!!||||||||||||| lnAlaLysAsnThrGlnLeuIleSerGlnLeuTyrHisAsnGlnSerArgArgPheGlyG 50954 : AGGCGAAGAACACGCAGCTCATCTCTCAGCTCTACCACAACCAGTCCAGACGCTTCGGCG : 50895 210 : lyProValHisHisGlnAlaGlnArgPhe{Ar} >>>> Target Intron 4 >>>> : 219 |||||:!!|||||||||||||||||||||{||} 542 bp lyProLeuHisHisGlnAlaGlnArgPhe{Ar}++ 50894 : GGCCCTTACACCACCAGGCACAGCGGTTC{AG}gt......................... : 50861 220 : {g}PheSerProMetGlyValAspHisMetSerGlyLeuSerGlyValAsnValProG : 238 {|}|||||||||||||||||||||||||||.!!.!!:!!.!!||||||!:!||||||| ++{g}PheSerProMetGlyValAspHisMetGlySerMetGlyGlyValSerValProG 50860 : ag{G}TTCTCCCCCATGGGTGTTGATCACATGGGCAGCATGGGAGGCGTCAGTGTCCCCG : 50266 239 : lyAsnAlaSerSerGlyTrpCysIlePheIleTyrAsnLeuGlyGlnAspAlaAspGluG : 258 |||||:!!!!!||||||||||||||||||||||||||||||||||||||||||||||||. lyAsnSerThrSerGlyTrpCysIlePheIleTyrAsnLeuGlyGlnAspAlaAspGluS 50265 : GCAACTCCACCTCCGGCTGGTGCATCTTCATCTACAACCTGGGCCAAGACGCAGACGAGA : 50206 259 : lyIleLeuTrpGlnMetPheGlyProPheGlyAlaValThrAsnValLysValIleArgA : 278 !!|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| erIleLeuTrpGlnMetPheGlyProPheGlyAlaValThrAsnValLysValIleArgA 50205 : GCATCCTGTGGCAGATGTTCGGCCCCTTCGGCGCCGTCACCAACGTCAAAGTGATCCGCG : 50146 279 : spPheAsnThrAsnLysCysLysGlyPheGlyPheValThrMetThrAsnTyrGluGluA : 298 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| spPheAsnThrAsnLysCysLysGlyPheGlyPheValThrMetThrAsnTyrGluGluA 50145 : ACTTCAACACCAACAAGTGCAAGGGCTTCGGCTTCGTTACCATGACGAACTACGAGGAGG : 50086 299 : laAlaMetAlaIleAlaSerLeuAsnGlyTyrArgLeuGlyAspLysIleLeuGlnValS : 318 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| laAlaMetAlaIleAlaSerLeuAsnGlyTyrArgLeuGlyAspLysIleLeuGlnValS 50085 : CGGCCATGGCTATCGCCAGCCTGAACGGCTACCGGCTTGGAGACAAGATACTGCAAGTGT : 50026 319 : erPheLysThrAsnLysSerHisLys : 326 |||||||||||!:!|||.!!|||||| erPheLysThrSerLysGlyHisLys 50025 : CCTTTAAGACCAGCAAGGGCCACAAG : 50000 vulgar: SPP00002928_2.0 0 326 . JXSJ01000369.1:subseq(224913,62487) 52815 49999 - 1437 M 12 36 G 1 0 M 44 132 S 0 1 5 0 2 I 0 534 3 0 2 S 1 2 M 34 102 5 0 2 I 0 631 3 0 2 M 51 153 S 0 1 5 0 2 I 0 122 3 0 2 S 1 2 M 74 222 S 0 2 5 0 2 I 0 538 3 0 2 S 1 1 M 107 321 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2016-11-22 ##type DNA # # # seqname source feature start end score strand frame attributes # JXSJ01000369.1:subseq(224913,62487) exonerate:protein2genome:local gene 50000 52815 1437 - . gene_id 1 ; sequence SPP00002928_2.0 ; gene_orientation + JXSJ01000369.1:subseq(224913,62487) exonerate:protein2genome:local cds 52647 52815 . - . JXSJ01000369.1:subseq(224913,62487) exonerate:protein2genome:local exon 52647 52815 . - . insertions 0 ; deletions 1 JXSJ01000369.1:subseq(224913,62487) exonerate:protein2genome:local splice5 52645 52646 . - . intron_id 1 ; splice_site "GT" JXSJ01000369.1:subseq(224913,62487) exonerate:protein2genome:local intron 52109 52646 . - . intron_id 1 JXSJ01000369.1:subseq(224913,62487) exonerate:protein2genome:local splice3 52109 52110 . - . intron_id 0 ; splice_site "ag" JXSJ01000369.1:subseq(224913,62487) exonerate:protein2genome:local cds 52005 52108 . - . JXSJ01000369.1:subseq(224913,62487) exonerate:protein2genome:local exon 52005 52108 . - . insertions 0 ; deletions 0 JXSJ01000369.1:subseq(224913,62487) exonerate:protein2genome:local splice5 52003 52004 . - . intron_id 2 ; splice_site "GT" JXSJ01000369.1:subseq(224913,62487) exonerate:protein2genome:local intron 51370 52004 . - . intron_id 2 JXSJ01000369.1:subseq(224913,62487) exonerate:protein2genome:local splice3 51370 51371 . - . intron_id 1 ; splice_site "AG" JXSJ01000369.1:subseq(224913,62487) exonerate:protein2genome:local cds 51216 51369 . - . JXSJ01000369.1:subseq(224913,62487) exonerate:protein2genome:local exon 51216 51369 . - . insertions 0 ; deletions 0 JXSJ01000369.1:subseq(224913,62487) exonerate:protein2genome:local splice5 51214 51215 . - . intron_id 3 ; splice_site "GT" JXSJ01000369.1:subseq(224913,62487) exonerate:protein2genome:local intron 51090 51215 . - . intron_id 3 JXSJ01000369.1:subseq(224913,62487) exonerate:protein2genome:local splice3 51090 51091 . - . intron_id 2 ; splice_site "AG" JXSJ01000369.1:subseq(224913,62487) exonerate:protein2genome:local cds 50864 51089 . - . JXSJ01000369.1:subseq(224913,62487) exonerate:protein2genome:local exon 50864 51089 . - . insertions 0 ; deletions 0 JXSJ01000369.1:subseq(224913,62487) exonerate:protein2genome:local splice5 50862 50863 . - . intron_id 4 ; splice_site "GT" JXSJ01000369.1:subseq(224913,62487) exonerate:protein2genome:local intron 50322 50863 . - . intron_id 4 JXSJ01000369.1:subseq(224913,62487) exonerate:protein2genome:local splice3 50322 50323 . - . intron_id 3 ; splice_site "AG" JXSJ01000369.1:subseq(224913,62487) exonerate:protein2genome:local cds 50000 50321 . - . JXSJ01000369.1:subseq(224913,62487) exonerate:protein2genome:local exon 50000 50321 . - . insertions 0 ; deletions 0 JXSJ01000369.1:subseq(224913,62487) exonerate:protein2genome:local similarity 50000 52815 1437 - . alignment_id 1 ; Query SPP00002928_2.0 ; Align 52816 1 36 ; Align 52780 14 132 ; Align 52107 59 102 ; Align 51370 93 153 ; Align 51088 145 222 ; Align 50321 220 321 # --- END OF GFF DUMP --- # -- completed exonerate analysis