TBLASTN 2.2.30+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: /export/cursos/20428/BI/genomes/2016/Miichthys_miiuy/genome.fa 6,294 sequences; 619,300,777 total letters Query= SPP00000662_2.0 # Protein # Eukaryotic elongation factor (eEFsec) # Zebrafish Length=576 Score E Sequences producing significant alignments: (Bits) Value JXSJ01000351.1 Miichthys miiuy scaffold351, whole genome shotgu... 310 2e-89 JXSJ01000843.1 Miichthys miiuy scaffold843, whole genome shotgu... 43.1 0.009 JXSJ01000015.1 Miichthys miiuy scaffold15, whole genome shotgun... 42.0 0.023 JXSJ01000189.1 Miichthys miiuy scaffold189, whole genome shotgu... 41.6 0.029 JXSJ01000004.1 Miichthys miiuy scaffold4, whole genome shotgun ... 40.8 0.052 JXSJ01000473.1 Miichthys miiuy scaffold473, whole genome shotgu... 39.7 0.100 JXSJ01000326.1 Miichthys miiuy scaffold326, whole genome shotgu... 38.5 0.25 JXSJ01001399.1 Miichthys miiuy scaffold1399, whole genome shotg... 37.4 0.51 JXSJ01000092.1 Miichthys miiuy scaffold92, whole genome shotgun... 36.2 1.4 JXSJ01000207.1 Miichthys miiuy scaffold207, whole genome shotgu... 34.3 5.6 JXSJ01000505.1 Miichthys miiuy scaffold505, whole genome shotgu... 33.9 6.5 > JXSJ01000351.1 Miichthys miiuy scaffold351, whole genome shotgun sequence Length=301809 Score = 310 bits (795), Expect = 2e-89, Method: Compositional matrix adjust. Identities = 154/250 (62%), Positives = 187/250 (75%), Gaps = 11/250 (4%) Frame = -3 Query 247 NVEIPALKVTRKVKSVQMFRKPVASAMQGDRVGVCVTQFDPKLLERGVVCTPGSLQTLYA 306 N++ +VT+K+KSVQMFRKPV+ AMQGDRVGVCVTQFDPKLLERGVVCTPGSL+TLYA Sbjct 80809 NLDALCHQVTKKIKSVQMFRKPVSGAMQGDRVGVCVTQFDPKLLERGVVCTPGSLRTLYA 80630 Query 307 AIISVQKIEYYRGALNSRAKFHITVGHETVMARISFFNRVLPANENGDSKPTSQEQSA-- 364 A+ISV+KI Y++G+L +RAKFHITVGHETVMAR++FF LP + D+KP E + Sbjct 80629 AVISVRKIGYFKGSLATRAKFHITVGHETVMARVTFFG--LPPVGDSDTKPPPSEPCSLE 80456 Query 365 NSFSFDWEFHHLDEHLTSQAEGGKG-EPQQWALLEFERPVTCPPLCLVIGSRLDSDIHGN 423 F+FD E+ + DE++T Q E +P+QWALLEFERPVTCP LCLVIGS+LD+DIH N Sbjct 80455 TPFTFDREYFYQDEYVTGQGEASSAPDPEQWALLEFERPVTCPSLCLVIGSKLDTDIHAN 80276 Query 424 TCRLAFHGKLLEGFEDKNYTETALPRLKISKDKQKEGAVERVTDDYTVIGRNLFKKETNL 483 CRLAF G LL+GFEDK Y ETALPRL+I K K +EG VERV+ G + + Sbjct 80275 ACRLAFQGYLLQGFEDKGYAETALPRLRIYKTKHREGQVERVS------GHSFLIVALSA 80114 Query 484 QLFVGLKVTL 493 V L VTL Sbjct 80113 YFSVALSVTL 80084 Score = 144 bits (364), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 85/94 (90%), Positives = 91/94 (97%), Gaps = 1/94 (1%) Frame = -1 Query 6 KTLNFNVGVLGHVDSGKtslaralsstastaaFDKNPQSKERGITLDLGFSAFTVPLPEH 65 KTLNFNVGVLGHVDSGKTSLARALSSTASTAAFDKNPQS+ERGITLDLGFS+FTV LP+H Sbjct 85452 KTLNFNVGVLGHVDSGKTSLARALSSTASTAAFDKNPQSRERGITLDLGFSSFTVDLPDH 85273 Query 66 LR-ESCGEKQYDSLQFTLVDCPGHASLIRTIIGG 98 LR +S G+KQY+SLQFTLVDCPGHASLIRTIIGG Sbjct 85272 LRDDSGGQKQYESLQFTLVDCPGHASLIRTIIGG 85171 Score = 126 bits (316), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 61/70 (87%), Positives = 67/70 (96%), Gaps = 0/70 (0%) Frame = -2 Query 98 GAQIIDLMMLVVDVVKGMQTQTAECLLIGQLTCSRMVVILNKTDLLPSDKRQVAIDKMTK 157 GAQIIDLMMLVVDVVKG+QTQTAECLLIG+LTC RMVV+LNKTDLLP +KRQ AI+KMTK Sbjct 83621 GAQIIDLMMLVVDVVKGVQTQTAECLLIGELTCPRMVVVLNKTDLLPPNKRQSAIEKMTK 83442 Query 158 RMHKTLENTR 167 R+HKTLENTR Sbjct 83441 RLHKTLENTR 83412 Score = 101 bits (252), Expect = 7e-21, Method: Compositional matrix adjust. Identities = 47/59 (80%), Positives = 52/59 (88%), Gaps = 0/59 (0%) Frame = -2 Query 200 LLKAQSFLPHRDPSGSLLMAVDHCFSIRGQGTVITGTILQGSLSVNDNVEIPALKVTRK 258 LLK Q++LP RDP G LLMAVDHCFSIRGQGTV+TGTILQGSL++ND VEIPALKV K Sbjct 81986 LLKKQTYLPQRDPGGDLLMAVDHCFSIRGQGTVMTGTILQGSLAINDTVEIPALKVRSK 81810 Score = 95.9 bits (237), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 47/52 (90%), Positives = 48/52 (92%), Gaps = 0/52 (0%) Frame = -2 Query 464 RVTDDYTVIGRNLFKKETNLQLFVGLKVTLSTGEAGSIEGGFGQSGKIKIRI 515 +VTDDYTVIGRNLFKKETNLQLFVGLKV LSTGE G IEGGFGQSGK KIRI Sbjct 78647 QVTDDYTVIGRNLFKKETNLQLFVGLKVKLSTGETGVIEGGFGQSGKFKIRI 78492 Score = 63.2 bits (152), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 26/36 (72%), Positives = 33/36 (92%), Gaps = 0/36 (0%) Frame = -3 Query 165 NTRFKDCPIIAVAAKPGGPEAPDTDEPQGITELIDL 200 + RFK+CP+IAVAAKPGGPEAPDT+EP G+ ELI++ Sbjct 83134 SARFKECPVIAVAAKPGGPEAPDTEEPHGVPELIEV 83027 Score = 61.6 bits (148), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 43/61 (70%), Positives = 50/61 (82%), Gaps = 0/61 (0%) Frame = -2 Query 516 PEGLKEETKQLLsssskkkgkggskNESPKLEEAKPDAQPVTIHLNFKRYIYDPHKKMVQ 575 PEGL ETKQ+LSS+SKKKGKGGSK EE K D+QP+ IHL+FKRY++DPHKKMVQ Sbjct 76373 PEGLCPETKQMLSSTSKKKGKGGSKGGPANEEEPKTDSQPIIIHLHFKRYVFDPHKKMVQ 76194 Query 576 S 576 S Sbjct 76193 S 76191 > JXSJ01000843.1 Miichthys miiuy scaffold843, whole genome shotgun sequence Length=118870 Score = 43.1 bits (100), Expect = 0.009, Method: Compositional matrix adjust. Identities = 22/71 (31%), Positives = 36/71 (51%), Gaps = 15/71 (21%) Frame = +2 Query 38 FDKNPQSKERGITLDLGFSAFTVPLPEHLRESCGEKQYDSLQFTLVDCPGHASLIRTIIG 97 D N + +++G T+++G + F + D FT++D PGH S + +IG Sbjct 46403 LDTNQEERDKGKTVEVGRAYF---------------ETDKKHFTILDAPGHKSFVPNMIG 46537 Query 98 GAQIIDLMMLV 108 GA DL +LV Sbjct 46538 GASQADLAVLV 46570 > JXSJ01000015.1 Miichthys miiuy scaffold15, whole genome shotgun sequence Length=4954414 Score = 42.0 bits (97), Expect = 0.023, Method: Compositional matrix adjust. Identities = 23/71 (32%), Positives = 38/71 (54%), Gaps = 15/71 (21%) Frame = +3 Query 38 FDKNPQSKERGITLDLGFSAFTVPLPEHLRESCGEKQYDSLQFTLVDCPGHASLIRTIIG 97 D N + +++G T+++G + F EK++ FT++D PGH S + +IG Sbjct 1339644 LDTNQEERDKGKTVEVGRAYFET-----------EKKH----FTILDAPGHKSFVPNMIG 1339778 Query 98 GAQIIDLMMLV 108 GA DL +LV Sbjct 1339779 GASQADLAVLV 1339811 > JXSJ01000189.1 Miichthys miiuy scaffold189, whole genome shotgun sequence Length=536819 Score = 41.6 bits (96), Expect = 0.029, Method: Compositional matrix adjust. Identities = 27/72 (38%), Positives = 36/72 (50%), Gaps = 0/72 (0%) Frame = -1 Query 224 FSIRGQGTVITGTILQGSLSVNDNVEIPALKVTRKVKSVQMFRKPVASAMQGDRVGVCVT 283 FS+ G GTV G + G L V + VT +VKSV+M + + A+ GD VG V Sbjct 184937 FSLPGIGTVPVGRVETGVLKPGMVVTFAPVNVTTEVKSVEMHHEALTEALPGDNVGFNVK 184758 Query 284 QFDPKLLERGVV 295 K + RG V Sbjct 184757 NVSVKDIRRGNV 184722 > JXSJ01000004.1 Miichthys miiuy scaffold4, whole genome shotgun sequence Length=8983680 Score = 40.8 bits (94), Expect = 0.052, Method: Compositional matrix adjust. Identities = 22/43 (51%), Positives = 27/43 (63%), Gaps = 8/43 (19%) Frame = +2 Query 462 VERVTDDYTVIGRNLFKKETNLQLFVGLKVTLSTGEAGSIEGG 504 V + D+Y +I RNLF FVGL+VTLSTGE I+GG Sbjct 3357929 VIAIADNYPMIARNLF--------FVGLQVTLSTGETSVIKGG 3358033 > JXSJ01000473.1 Miichthys miiuy scaffold473, whole genome shotgun sequence Length=227131 Score = 39.7 bits (91), Expect = 0.100, Method: Compositional matrix adjust. Identities = 28/81 (35%), Positives = 40/81 (49%), Gaps = 2/81 (2%) Frame = -1 Query 216 LLMAVDHCFSIRGQGTVITGTILQGSLSVNDNVEIPALKVTRKVKSVQMFRKPVASAMQG 275 L+ ++ + FS G GTV G + G L V + VT +VKSV+M + + A+ G Sbjct 168721 LMFSILNRFS--GIGTVPVGRVETGILKSGTVVTFAPVNVTTEVKSVEMHHEALTEALPG 168548 Query 276 DRVGVCVTQFDPKLLERGVVC 296 D VG V K + RG V Sbjct 168547 DNVGFNVKNVSVKDIRRGNVA 168485 Score = 35.4 bits (80), Expect = 2.5, Method: Compositional matrix adjust. Identities = 22/70 (31%), Positives = 33/70 (47%), Gaps = 16/70 (23%) Frame = -2 Query 39 DKNPQSKERGITLDLGFSAFTVPLPEHLRESCGEKQYDSLQFTLVDCPGHASLIRTII-G 97 DK +ERGIT+D+ F K Y T++D PGH I+ +I G Sbjct 189789 DKLKAERERGITIDISLWKFETS-----------KYY----VTIIDAPGHRDFIKNMITG 189655 Query 98 GAQIIDLMML 107 +Q+ ++ ML Sbjct 189654 TSQVCNMRML 189625 Score = 35.4 bits (80), Expect = 2.5, Method: Compositional matrix adjust. Identities = 22/70 (31%), Positives = 33/70 (47%), Gaps = 16/70 (23%) Frame = -3 Query 39 DKNPQSKERGITLDLGFSAFTVPLPEHLRESCGEKQYDSLQFTLVDCPGHASLIRTII-G 97 DK +ERGIT+D+ F K Y T++D PGH I+ +I G Sbjct 169985 DKLKAERERGITIDISLWKFETS-----------KYY----VTIIDAPGHRDFIKNMITG 169851 Query 98 GAQIIDLMML 107 +Q+ ++ ML Sbjct 169850 TSQVCNMRML 169821 > JXSJ01000326.1 Miichthys miiuy scaffold326, whole genome shotgun sequence Length=324905 Score = 38.5 bits (88), Expect = 0.25, Method: Compositional matrix adjust. Identities = 25/71 (35%), Positives = 35/71 (49%), Gaps = 0/71 (0%) Frame = +1 Query 226 IRGQGTVITGTILQGSLSVNDNVEIPALKVTRKVKSVQMFRKPVASAMQGDRVGVCVTQF 285 + G GTV G + G L V +T +VKSV+M + +A A+ GD VG V Sbjct 249775 VSGIGTVPVGRVETGVLKPGMVVNFAPANLTSEVKSVEMHHESLAEALPGDNVGFNVKNL 249954 Query 286 DPKLLERGVVC 296 K ++RG V Sbjct 249955 SIKDIKRGNVA 249987 > JXSJ01001399.1 Miichthys miiuy scaffold1399, whole genome shotgun sequence Length=55975 Score = 37.4 bits (85), Expect = 0.51, Method: Compositional matrix adjust. Identities = 28/77 (36%), Positives = 36/77 (47%), Gaps = 2/77 (3%) Frame = -3 Query 219 AVDHCFSIRGQGTVITGTILQGSLSVNDNVEIPALKVTRKVKSVQMFRKPVASAMQGDRV 278 AV C S G GTV G + G L V +T +VKSV+M + + A+ GD V Sbjct 7112 AVSRCLS--GIGTVPVGRVETGVLKPGMVVTFAPPNLTTEVKSVEMHHESLPEAVPGDNV 6939 Query 279 GVCVTQFDPKLLERGVV 295 G V K + RG V Sbjct 6938 GFNVKNISIKEIRRGNV 6888 Score = 37.0 bits (84), Expect = 0.85, Method: Compositional matrix adjust. Identities = 24/69 (35%), Positives = 33/69 (48%), Gaps = 0/69 (0%) Frame = -3 Query 228 GQGTVITGTILQGSLSVNDNVEIPALKVTRKVKSVQMFRKPVASAMQGDRVGVCVTQFDP 287 G GTV G + G L V + +T +VKSV+M + + A+ GD VG V Sbjct 12671 GIGTVPVGRVETGVLKPGMVVNFAPVNLTTEVKSVEMHHESLPEAVPGDNVGFNVKNVSV 12492 Query 288 KLLERGVVC 296 K + RG V Sbjct 12491 KEIRRGFVA 12465 Score = 35.0 bits (79), Expect = 3.2, Method: Compositional matrix adjust. Identities = 26/75 (35%), Positives = 35/75 (47%), Gaps = 1/75 (1%) Frame = -3 Query 222 HCFSIRGQGTVITGTILQGSLSVNDNVEIPALKVTRKVKSVQMFRKPVASAMQGDRVGVC 281 +C S G GTV G + G L V +T +VKSV+M + + A+ GD VG Sbjct 1133 NCLS-PGIGTVPVGRVETGVLKPGMVVTFAPANLTTEVKSVEMHHESLPEAVPGDNVGFN 957 Query 282 VTQFDPKLLERGVVC 296 V K + RG V Sbjct 956 VKNISIKEIRRGNVA 912 > JXSJ01000092.1 Miichthys miiuy scaffold92, whole genome shotgun sequence Length=1173146 Score = 36.2 bits (82), Expect = 1.4, Method: Compositional matrix adjust. Identities = 24/74 (32%), Positives = 34/74 (46%), Gaps = 0/74 (0%) Frame = -1 Query 223 CFSIRGQGTVITGTILQGSLSVNDNVEIPALKVTRKVKSVQMFRKPVASAMQGDRVGVCV 282 F G GTV G I G L + K+T +VKS++M + + +A+ G VG + Sbjct 702050 VFIFSGVGTVPVGKIETGVLKPGMTLVFSPAKLTAEVKSIEMHHQGLQTALPGHNVGFNI 701871 Query 283 TQFDPKLLERGVVC 296 K L RG V Sbjct 701870 KNVSVKNLRRGDVA 701829 > JXSJ01000207.1 Miichthys miiuy scaffold207, whole genome shotgun sequence Length=480975 Score = 34.3 bits (77), Expect = 5.6, Method: Compositional matrix adjust. Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 0/43 (0%) Frame = +2 Query 81 TLVDCPGHASLIRTIIGGAQIIDLMMLVVDVVKGMQTQTAECL 123 T +D PGHA+ GA D+++LVV G+ QT E + Sbjct 200918 TFLDTPGHAAFSSMRARGANATDIVVLVVAADDGVMNQTVESI 201046 > JXSJ01000505.1 Miichthys miiuy scaffold505, whole genome shotgun sequence Length=213426 Score = 33.9 bits (76), Expect = 6.5, Method: Compositional matrix adjust. Identities = 12/29 (41%), Positives = 21/29 (72%), Gaps = 0/29 (0%) Frame = -3 Query 81 TLVDCPGHASLIRTIIGGAQIIDLMMLVV 109 + VDCPGH L+ T++ GA ++D +L++ Sbjct 181333 SFVDCPGHDILMATMLNGAAVMDAALLLI 181247 Lambda K H a alpha 0.318 0.136 0.396 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 92538246600 Database: /export/cursos/20428/BI/genomes/2016/Miichthys_miiuy/genome.fa Posted date: Oct 21, 2016 4:44 PM Number of letters in database: 619,300,777 Number of sequences in database: 6,294 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 13 Window for multiple hits: 40