Command line: [exonerate -m p2g --showtargetgff -q dio3b_zf.aa.fa.canviat -t genomedio3b_JXSJ01000021.1.fa]
Hostname: [ws116069U]

C4 Alignment:
------------
         Query: SPP00000613_2.0DIO3b # Protein # Iodothyronine deiodinase 3b (DIO3b) # Zebrafish 
        Target: JXSJ01000021.1:subseq(1202833,100743) Miichthys miiuy scaffold21, whole genome shotgun sequence:[revcomp]
         Model: protein2genome:local
     Raw score: 846
   Query range: 0 -> 253
  Target range: 50743 -> 50002

     1 : ArgAlaLeuLysAsnAlaLeuValCysLeuLeuIleLeuProArgPheLeuValAlaAla :    20
         !:!|||:!!|||!.!|||:!!|||||||||:!!:!:|||||||||||||||:!!||||||
         LysAlaIleLysThrAlaIleValCysLeuValLeuLeuProArgPheLeuMetAlaAla
 50743 : AAAGCTATTAAAACTGCAATAGTCTGTCTCGTCTTGCTGCCCCGTTTTCTGATGGCAGCG : 50686

    21 : PheMetLeuTrpCysLeuAspPheLeuCysValArgLysArgValLeuValHisLeuGln :    40
          !!|||!!!|||  !|||||||||||||||:!!||||||||||||!!! !!         
         ValMetPheTrpLeuLeuAspPheLeuCysIleArgLysArgValPhePhe---------
 50685 : GTCATGTTTTGGCTTCTTGACTTTTTATGCATAAGGAAAAGGGTTTTCTTC--------- : 50632

    41 : GluArgAlaGluGluGluGluGluAspAlaGluGluGluGluGluProLeuCysIleSer :    60
            |||  !:!!|||:!!|||!  ||||||         !!:   |||||||||||||||
         ---ArgMetLysGluGlnGluGlyAspAla------IleAspProProLeuCysIleSer
 50631 : ---AGGATGAAGGAGCAGGAGGGCGATGCC------ATCGATCCTCCACTGTGCATATCA : 50584

    61 : AspSerSerArgMetPheSerTrpGluSerLeuLysAlaValPheHisGlyHisLysLeu :    80
         ||||||!:!|||:!:||||||  !||||||||||||||||||!::|||||||||||||||
         AspSerAsnArgLeuPheSerLeuGluSerLeuLysAlaValTrpHisGlyHisLysLeu
 50583 : GACTCCAATCGTCTCTTCAGCCTGGAGTCCCTCAAGGCAGTGTGGCACGGACATAAACTG : 50524

    81 : AspTyrMetLysSerAlaArgLeuGlyHisAlaAlaProAspSerGluValPheProLeu :   100
         |||!:!:!:|||:!!|||!.!|||||||||!.!||||||:!!!!!|||||| !!! !|||
         AspPheLeuLysAlaAlaHisLeuGlyHisGlyAlaProAsnThrGluValValGlnLeu
 50523 : GACTTTCTCAAAGCGGCGCATCTCGGACACGGAGCGCCCAACACTGAAGTTGTTCAGCTG : 50464

   101 : AlaGluProArgArgGlyArgValLeuGluPheAlaArgGlyHisArgProLeuValLeu :   120
         ! !!!:! !||||||.!!|||:!!|||!!:!:!|||!:!! ! ! |||||||||:!!|||
         GluAspGlnArgArgSerArgIleLeuAspTyrAlaLysAspLysArgProLeuIleLeu
 50463 : GAGGATCAGCGGCGCAGCCGCATCCTGGATTACGCAAAGGACAAGAGACCGCTCATCCTC : 50404

   121 : SerPheGlySerCysSerUnkProProPheMetArgArgLeuLysAlaPheArgArgLeu :   140
         !:!||||||||||||!!!   ||||||||||||  !|||||||||||||||!:! !!:!!
         AsnPheGlySerCysThr***ProProPheMetAlaArgLeuLysAlaPheGlnGlyVal
 50403 : AACTTTGGCAGCTGCACCTGACCACCGTTCATGGCGCGTCTGAAGGCGTTTCAGGGAGTC : 50344

   141 : ValLeuArgTyrAlaAspValAlaAspAlaLeuLeuIleTyrIleGluGluAlaHisPro :   160
         |||! !!:! !!||||||:!!||||||:!!:!!:!!:!:|||||||||||||||||||||
         ValGlnGlnAsnAlaAspIleAlaAspSerValValValTyrIleGluGluAlaHisPro
 50343 : GTGCAGCAAAACGCAGATATAGCAGACTCTGTAGTTGTGTATATCGAGGAAGCGCACCCC : 50284

   161 : SerAspGlyTrpArgSerSerAspAlaProHisGlnIleArgArgHisArgSerLeuGlu :   180
         ||||||||||||! !|||!!!|||||||||:!!||||||! !!:!||||||!!!||||||
         SerAspGlyTrpMetSerThrAspAlaProTyrGlnIleProLysHisArgCysLeuGlu
 50283 : TCCGACGGCTGGATGAGCACTGACGCGCCCTATCAGATCCCCAAACACCGGTGTCTGGAG : 50224

   181 : GluArgLeuSerAlaAlaArgLeuMetGluArgGluAlaProGlyCysAlaValValAla :   200
         !!:||||||!:!||||||!:!||||||.!.! !|||!.!|||||||||  !||||||!.!
         AspArgLeuAsnAlaAlaGlnLeuMetHisLeuGluValProGlyCysLeuValValVal
 50223 : GACCGGCTGAACGCGGCGCAGCTGATGCACCTGGAAGTGCCCGGCTGCCTGGTCGTGGTC : 50164

   201 : AspGlyMetGluAsnAlaAlaAsnSerAlaTyrGlyAlaTyrPheAspArgLeuTyrIle :   220
         |||.!!|||||||||:!!:!!|||:!!|||||||||||||||||||||||||||||||||
         AspSerMetGluAsnSerSerAsnAlaAlaTyrGlyAlaTyrPheAspArgLeuTyrIle
 50163 : GACAGCATGGAAAACTCCTCCAACGCTGCATACGGAGCTTATTTCGACAGACTTTATATA : 50104

   221 : ValGlnAspGlyArgValValTyrGlnGlyGlyArgGlyProGluGlyPheArgIleSer :   240
         :!!|||!!:|||!:!:!!||||||||||||||||||||||||||||||!:!||||||!!!
         LeuGlnGluGlyLysIleValTyrGlnGlyGlyArgGlyProGluGlyTyrArgIleThr
 50103 : CTGCAGGAGGGAAAGATAGTTTACCAGGGTGGCAGAGGACCCGAAGGATATCGGATCACA : 50044

   241 : GluLeuArgHisTrpLeuAspArgTyrArgGluArgLeu :   253
         ||||||||| !!|||||||||!:!|||||||||||||||
         GluLeuArgAspTrpLeuAspGlnTyrArgGluArgLeu
 50043 : GAGCTCAGAGACTGGCTGGATCAATACAGAGAAAGGCTT : 50003

vulgar: SPP00000613_2.0DIO3b 0 253 . JXSJ01000021.1:subseq(1202833,100743) 50743 50002 - 846 M 37 111 G 4 0 M 9 27 G 2 0 M 201 603
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2016-11-18
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
JXSJ01000021.1:subseq(1202833,100743)	exonerate:protein2genome:local	gene	50003	50743	846	-	.	gene_id 1 ; sequence SPP00000613_2.0DIO3b ; gene_orientation .
JXSJ01000021.1:subseq(1202833,100743)	exonerate:protein2genome:local	cds	50003	50743	.	-	.	
JXSJ01000021.1:subseq(1202833,100743)	exonerate:protein2genome:local	exon	50003	50743	.	-	.	insertions 0 ; deletions 6
JXSJ01000021.1:subseq(1202833,100743)	exonerate:protein2genome:local	similarity	50003	50743	846	-	.	alignment_id 1 ; Query SPP00000613_2.0DIO3b ; Align 50744 1 111 ; Align 50633 42 27 ; Align 50606 53 603
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis